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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005135
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 173 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.524s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004719.1
n.a. Uncharacterized protein TCM_026293 [Theobroma cacao] gi|508719127|gb|EOY11024.1| chr0 1755871 1756388 +
3 domain predictions
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Lj0g3v0006959.1
n.a. Cytochrome P450 [Medicago truncatula] gi|358345537|ref|XP_003636833.1| chr0 2715571 2718020 +
2 domain predictions
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Lj0g3v0010119.1
n.a. DNAse I-like superfamily protein isoform 4 [Theobroma cacao] gi|508782293|gb|EOY29549.1| chr0 4136058 4137393 +
2 domain predictions
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Lj0g3v0015419.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920210|gb|AFP55557.1| chr0 6013721 6014245 -
3 domain predictions
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Lj0g3v0037719.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Cicer arietinum] gi|502123422|ref|XP_004498104.1| chr0 12192798 12199781 +
3 domain predictions
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Lj0g3v0037739.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356528190|ref|XP_003532688.1| chr0 12196483 12202117 +
2 domain predictions
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Lj0g3v0077999.1
n.a. Elongation factor 1-alpha [Aegilops tauschii] gi|475541027|gb|EMT09703.1| chr0 30024340 30025391 +
3 domain predictions
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Lj0g3v0112979.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1-like isoform X2 [Cicer arietinum] gi|502093366|ref|XP_004489919.1| chr0 49311469 49322332 -
4 domain predictions
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Lj0g3v0112979.2
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1-like isoform X1 [Cicer arietinum] gi|502093363|ref|XP_004489918.1| chr0 49311469 49322318 -
4 domain predictions
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Lj0g3v0124079.1
n.a. non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] gi|9758157|dbj|BAB08714.1| chr0 55707551 55708104 -
3 domain predictions
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Lj0g3v0152049.1
n.a. LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like protein [Theobroma cacao] gi|508700971|gb|EOX92867.1| chr0 70888065 70890110 +
3 domain predictions
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Lj0g3v0188239.1
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family [Theobroma cacao] gi|508703634|gb|EOX95530.1| chr0 91923221 91924718 +
3 domain predictions
 –
Lj0g3v0200109.1
n.a. Elongation factor 1-alpha [Aegilops tauschii] gi|475541027|gb|EMT09703.1| chr0 98655451 98656268 -
3 domain predictions
 –
Lj0g3v0209819.1
n.a. Cytochrome P450 [Medicago truncatula] gi|358345537|ref|XP_003636833.1| chr0 105326048 105327306 +
2 domain predictions
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Lj0g3v0229619.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920227|gb|AFP55574.1| chr0 118902039 118903326 -
3 domain predictions
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Lj0g3v0241849.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1-like isoform X1 [Cicer arietinum] gi|502118868|ref|XP_004496424.1| chr0 125509353 125510927 -
3 domain predictions
 –
Lj0g3v0241859.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula] gi|357443449|ref|XP_003592002.1| chr0 125510874 125510982 -
2 domain predictions
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Lj0g3v0241869.1
n.a. n.a. chr0 125510874 125510982 -
2 domain predictions
 –
Lj0g3v0241879.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 1-like [Glycine max] gi|356535745|ref|XP_003536404.1| chr0 125511579 125511872 -
3 domain predictions
 –
Lj0g3v0254799.1
n.a. Uncharacterized protein TCM_026293 [Theobroma cacao] gi|508719127|gb|EOY11024.1| chr0 132304206 132304987 -
3 domain predictions
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Lj0g3v0263109.1
n.a. Endonuclease/exonuclease/phosphatase [Medicago truncatula] gi|124359529|gb|ABD32574.2| chr0 136442397 136442974 -
3 domain predictions
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Lj0g3v0276319.1
n.a. OSJNBa0061G20.16 [Oryza sativa Japonica Group] gi|38346596|emb|CAE04660.2| chr0 143350705 143351944 +
2 domain predictions
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Lj0g3v0311069.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] gi|124360558|gb|ABN08564.1| chr0 162450028 162450571 +
3 domain predictions
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Lj0g3v0337259.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula] gi|357515611|ref|XP_003628094.1| chr0 176606852 176610267 -
4 domain predictions
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Lj0g3v0337259.2
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like isoform X1 [Cicer arietinum] gi|502158429|ref|XP_004511149.1| chr0 176606852 176612323 -
4 domain predictions
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Lj0g3v0355779.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920210|gb|AFP55557.1| chr0 187400834 187401358 +
3 domain predictions
 –
Lj1g3v0101550.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356535991|ref|XP_003536524.1| chr1 987072 992027 -
4 domain predictions
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Lj1g3v0116360.1
n.a. PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Cicer arietinum] gi|502159083|ref|XP_004511388.1| chr1 1368480 1373165 +
4 domain predictions
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Lj1g3v0293680.1
n.a. PREDICTED: exodeoxyribonuclease-like [Glycine max] gi|356508768|ref|XP_003523126.1| chr1 3394687 3403097 -
4 domain predictions
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Lj1g3v0318600.1
n.a. RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] gi|124359510|gb|ABD28627.2| chr1 3870119 3871003 -
3 domain predictions
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Lj1g3v1091290.1
n.a. calcium-binding endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] gi|145334817|ref|NP_001078754.1| chr1 13732256 13736999 -
4 domain predictions
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Lj1g3v1091290.2
n.a. calcium-binding endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] gi|145334817|ref|NP_001078754.1| chr1 13732256 13736999 -
4 domain predictions
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Lj1g3v1477270.1
n.a. Uncharacterized protein TCM_026293 [Theobroma cacao] gi|508719127|gb|EOY11024.1| chr1 17589195 17589647 +
3 domain predictions
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Lj1g3v2205370.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347996|ref|XP_003638036.1| chr1 26354940 26355332 +
3 domain predictions
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Lj1g3v3704920.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356503672|ref|XP_003520630.1| chr1 42682279 42685560 -
3 domain predictions
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Lj1g3v3846990.1
n.a. Very similar to retrotransposon reverse transcriptase [Arabidopsis thaliana] gi|6587849|gb|AAF18538.1|AC006551_24 chr1 44142353 44143568 -
2 domain predictions
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Lj1g3v4764170.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] gi|356505479|ref|XP_003521518.1| chr1 57250042 57262942 -
4 domain predictions
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Lj2g3v0571670.1
n.a. non-ltr retroelement reverse transcriptase [Rosa rugosa] gi|399920210|gb|AFP55557.1| chr2 7804224 7804803 +
2 domain predictions
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Lj2g3v0634970.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347996|ref|XP_003638036.1| chr2 9484826 9499160 -
3 domain predictions
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Lj2g3v0740640.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 5-like [Glycine max] gi|356549563|ref|XP_003543162.1| chr2 11592805 11599957 +
4 domain predictions
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Lj2g3v1022530.1
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356550941|ref|XP_003543840.1| chr2 16136856 16140964 -
3 domain predictions
 –
Lj2g3v1022530.2
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356550941|ref|XP_003543840.1| chr2 16136856 16140964 -
3 domain predictions
 –
Lj2g3v1022530.3
n.a. PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Glycine max] gi|356550941|ref|XP_003543840.1| chr2 16136856 16140964 -
4 domain predictions
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Lj2g3v1172250.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|358347996|ref|XP_003638036.1| chr2 18520715 18521731 +
3 domain predictions
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Lj2g3v1550150.1
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 4-like [Cicer arietinum] gi|502161990|ref|XP_004512352.1| chr2 24564444 24569215 -
2 domain predictions
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Lj2g3v1550150.2
n.a. PREDICTED: carbon catabolite repressor protein 4 homolog 4-like [Cicer arietinum] gi|502161990|ref|XP_004512352.1| chr2 24564991 24569250 -
4 domain predictions
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Lj2g3v1985320.1
n.a. Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula] gi|357482325|ref|XP_003611448.1| chr2 29347854 29352347 -
4 domain predictions
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Lj2g3v2087770.1
n.a. F28K19.3 [Arabidopsis thaliana] gi|6573755|gb|AAF17675.1|AC009243_2 chr2 31352862 31353332 +
3 domain predictions
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Lj3g3v1631900.1
n.a. PREDICTED: uncharacterized protein LOC100824808 [Brachypodium distachyon] gi|357139654|ref|XP_003571395.1| chr3 20792312 20792646 +
2 domain predictions
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Lj3g3v2520120.1
n.a. Calcium-binding endonuclease/exonuclease/phosphatase family [Theobroma cacao] gi|508703634|gb|EOX95530.1| chr3 31043720 31048327 -
3 domain predictions
 –