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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005811
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We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.282s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0395830.1
n.a. succinyl-CoA ligase alpha 1 subunit-like [Solanum tuberosum] gi|78191458|gb|ABB29950.1| chr1 4490001 4497568 +
2 domain predictions
1 GO term
Lj2g3v0609720.1
n.a. PREDICTED: probable succinyl-CoA ligase [ADP]-forming] gi|502173227|ref|XP_004515280.1| chr2 8278199 8281857 +
2 domain predictions
1 GO term
Lj4g3v2265020.1
n.a. PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| chr4 31430684 31436001 +
2 domain predictions
1 GO term
Lj4g3v2266260.1
n.a. ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] gi|148872938|gb|ABR15094.1| chr4 31525270 31532902 -
2 domain predictions
1 GO term
Lj5g3v1118370.1
n.a. succinyl-CoA ligase beta subunit [Caragana jubata] gi|146215968|gb|ABQ10186.1| chr5 17844201 17848743 -
2 domain predictions
1 GO term
Lj6g3v1915820.1
n.a. PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| chr6 21503671 21510032 -
2 domain predictions
1 GO term
LotjaGi2g1v0179800.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit alpha; TAIR: AT5G23250.1 Succinyl-CoA ligase, alpha subunit; Swiss-Prot: sp|Q8GTQ9|SUCA1_SOLLC Succinate--CoA ligase [ADP]-forming] subunit alpha-1, mitochondrial; TrEMBL-Plants: tr|V7C6K2|V7C6K2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0179800 LjG1.1_chr2 60156461 60161544 +
2 domain predictions
1 GO term
LotjaGi3g1v0397900_LC.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit alpha; TAIR: AT5G23250.1 Succinyl-CoA ligase, alpha subunit; Swiss-Prot: sp|Q8GTQ9|SUCA1_SOLLC Succinate--CoA ligase [ADP]-forming] subunit alpha-1, mitochondrial; TrEMBL-Plants: tr|K7AKH3|K7AKH3_PHLPR Uncharacterized protein; Found in the gene: LotjaGi3g1v0397900_LC LjG1.1_chr3 79987576 79989159 -
2 domain predictions
1 GO term
LotjaGi4g1v0331500.1
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71049914 71056168 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.2
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051451 71055847 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.3
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051750 71055847 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.4
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051750 71055847 +
2 domain predictions
1 GO term
LotjaGi5g1v0154600.1
n.a. Succinate--CoA ligase [ADP]-forming] subunit beta; TAIR: AT2G20420.1 ATP citrate lyase (ACL) family protein; Swiss-Prot: sp|O82662|SUCB_ARATH Succinate--CoA ligase [ADP]-forming] subunit beta, mitochondrial; TrEMBL-Plants: tr|A5HIG2|A5HIG2_9FABA Succinate-CoA ligase subunit beta; Found in the gene: LotjaGi5g1v0154600 LjG1.1_chr5 40153201 40158211 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.1
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57170652 57177518 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.2
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171649 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.3
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171650 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.4
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171949 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.5
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171949 57176934 +
2 domain predictions
1 GO term