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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1118370 |
| Transcript ID | Lj5g3v1118370.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | succinyl-CoA ligase beta subunit [Caragana jubata] gi|146215968|gb|ABQ10186.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 421 | 421 | 1.30E-268 | – | |
| PANTHER | 1 | 421 | 421 | 1.30E-268 | ||
| SUPERFAMILY | 27 | 273 | 247 | 1.06E-70 | – | |
| PIRSF | 28 | 422 | 395 | 3.20E-145 | ||
| TIGRFAM | 29 | 420 | 392 | 8.50E-133 | ||
| Pfam | 29 | 237 | 209 | 1.00E-60 | ||
| ProSiteProfiles | 36 | 262 | 227 | 10.167 | ||
| Gene3D | 49 | 129 | 81 | 8.50E-25 | ||
| Gene3D | 130 | 274 | 145 | 1.20E-54 | ||
| SUPERFAMILY | 274 | 419 | 146 | 1.83E-53 | ||
| Gene3D | 275 | 418 | 144 | 2.00E-64 | ||
| ProSitePatterns | 292 | 316 | 25 | – | ||
| Pfam | 297 | 417 | 121 | 3.50E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj5g3v1118370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1118370.1, powered by CORGI.
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