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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006016
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 89 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.535s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0073599.1
n.a. Universal stress protein A-like protein [Medicago truncatula] gi|357491807|ref|XP_003616191.1| chr0 27631431 27632187 +
2 domain predictions
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Lj0g3v0114039.1
n.a. PREDICTED: universal stress protein A-like protein-like [Cicer arietinum] gi|502148490|ref|XP_004507182.1| chr0 49882562 49884618 -
2 domain predictions
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Lj0g3v0117349.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao] gi|508724369|gb|EOY16266.1| chr0 51749539 51751637 +
2 domain predictions
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Lj0g3v0202679.1
n.a. PREDICTED: universal stress protein A-like protein-like [Cicer arietinum] gi|502096617|ref|XP_004490794.1| chr0 100362825 100365264 +
2 domain predictions
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Lj0g3v0232499.1
n.a. PREDICTED: universal stress protein A-like protein-like [Cicer arietinum] gi|502096617|ref|XP_004490794.1| chr0 120673311 120674382 +
2 domain predictions
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Lj0g3v0263839.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gi|508720856|gb|EOY12753.1| chr0 136770252 136772887 +
2 domain predictions
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Lj0g3v0263839.2
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gi|508720856|gb|EOY12753.1| chr0 136770252 136773150 +
2 domain predictions
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Lj0g3v0281929.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2 [Theobroma cacao] gi|508773661|gb|EOY20917.1| chr0 146188880 146191137 -
2 domain predictions
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Lj0g3v0281929.2
n.a. F27J15.25 [Arabidopsis thaliana] gi|7770340|gb|AAF69710.1|AC016041_15 chr0 146188880 146191137 -
2 domain predictions
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Lj0g3v0333639.1
n.a. PREDICTED: universal stress protein A-like protein-like [Cicer arietinum] gi|502141487|ref|XP_004504522.1| chr0 174607716 174610867 -
2 domain predictions
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Lj0g3v0359559.1
n.a. universal stress protein [Arachis hypogaea] gi|194466125|gb|ACF74293.1| chr0 189284278 189287169 +
2 domain predictions
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Lj1g3v0016530.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK14-like [Cicer arietinum] gi|502137085|ref|XP_004502962.1| chr1 183907 185155 -
2 domain predictions
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Lj1g3v0193150.1
n.a. Universal stress protein A-like protein [Medicago truncatula] gi|357489965|ref|XP_003615270.1| chr1 2144937 2148752 -
2 domain predictions
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Lj1g3v0193150.3
n.a. Universal stress protein A-like protein [Medicago truncatula] gi|357489965|ref|XP_003615270.1| chr1 2144937 2164237 -
2 domain predictions
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Lj1g3v0268780.2
n.a. PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max] gi|356515943|ref|XP_003526656.1| chr1 3054925 3056054 -
2 domain predictions
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Lj1g3v0813940.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao] gi|508724369|gb|EOY16266.1| chr1 10685677 10688534 +
2 domain predictions
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Lj1g3v0897610.1
n.a. PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max] gi|356515943|ref|XP_003526656.1| chr1 11338981 11343050 +
2 domain predictions
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Lj1g3v1787540.1
n.a. PREDICTED: U-box domain-containing protein 35-like isoform X2 [Cicer arietinum] gi|502132630|ref|XP_004501455.1| chr1 21159801 21165042 -
2 domain predictions
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Lj1g3v1991580.1
n.a. PREDICTED: U-box domain-containing protein 52-like [Glycine max] gi|356518294|ref|XP_003527814.1| chr1 23446709 23447241 +
2 domain predictions
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Lj1g3v3384610.1
n.a. Universal stress protein A-like protein [Medicago truncatula] gi|357467311|ref|XP_003603940.1| chr1 38914688 38917094 +
2 domain predictions
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Lj1g3v3441280.1
n.a. early nodulin ENOD18 [Vicia faba] gi|11602747|emb|CAC18556.1| chr1 39650758 39652408 +
2 domain predictions
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Lj2g3v0980450.1
n.a. PREDICTED: universal stress protein A-like protein-like [Glycine max] gi|356571299|ref|XP_003553816.1| chr2 15142736 15145434 -
2 domain predictions
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Lj2g3v1226750.2
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gi|508709728|gb|EOY01625.1| chr2 19528841 19529777 -
2 domain predictions
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Lj2g3v1226750.3
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 1 [Theobroma cacao] gi|508709728|gb|EOY01625.1| chr2 19528841 19529778 -
2 domain predictions
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Lj3g3v3236610.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao] gi|508786637|gb|EOY33893.1| chr3 39855576 39857374 -
2 domain predictions
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Lj4g3v0096280.1
n.a. PREDICTED: U-box domain-containing protein 33-like [Glycine max] gi|356522087|ref|XP_003529681.1| chr4 836832 842206 -
2 domain predictions
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Lj4g3v0097300.1
n.a. PREDICTED: U-box domain-containing protein 35-like [Glycine max] gi|356555775|ref|XP_003546205.1| chr4 845912 847776 -
2 domain predictions
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Lj4g3v1440680.1
n.a. PREDICTED: U-box domain-containing protein 36-like [Cicer arietinum] gi|502176629|ref|XP_004515904.1| chr4 22305563 22307666 +
2 domain predictions
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Lj4g3v1736130.1
n.a. Adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|15228516|ref|NP_186979.1| chr4 24927596 24928854 +
2 domain predictions
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Lj4g3v1784870.2
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein isoform 2 [Theobroma cacao] gi|508773661|gb|EOY20917.1| chr4 25229355 25231817 +
2 domain predictions
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Lj4g3v2641110.1
n.a. Universal stress protein family protein [Medicago truncatula] gi|357519241|ref|XP_003629909.1| chr4 35973029 35973508 +
2 domain predictions
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Lj5g3v1514660.1
n.a. PREDICTED: universal stress protein A-like protein-like [Cicer arietinum] gi|502117003|ref|XP_004495667.1| chr5 22081494 22083441 +
2 domain predictions
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Lj5g3v1600660.1
n.a. PREDICTED: universal stress protein A-like protein-like isoform X2 [Cicer arietinum] gi|502117712|ref|XP_004495909.1| chr5 23114109 23115065 +
2 domain predictions
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Lj5g3v1628990.1
n.a. PREDICTED: LOW QUALITY PROTEIN: universal stress protein MJ0531-like [Glycine max] gi|356505576|ref|XP_003521566.1| chr5 23605522 23606812 +
2 domain predictions
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Lj6g3v1708470.1
n.a. PREDICTED: U-box domain-containing protein 35-like [Cicer arietinum] gi|502079768|ref|XP_004486362.1| chr6 19375699 19377729 -
2 domain predictions
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Lj6g3v1904520.1
n.a. PREDICTED: universal stress protein A-like protein-like [Glycine max] gi|356558131|ref|XP_003547361.1| chr6 21375930 21377648 +
2 domain predictions
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LotjaGi1g1v0098500.1
n.a. Universal stress protein family protein; TAIR: AT3G03270.2 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein; TrEMBL-Plants: tr|I3SUJ0|I3SUJ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0098500 LjG1.1_chr1 14997601 15000454 +
2 domain predictions
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LotjaGi1g1v0098700.1
n.a. Universal stress protein family protein; TAIR: AT3G03270.2 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8VYN9|PHO32_ARATH Universal stress protein PHOS32; TrEMBL-Plants: tr|A0A151S0L0|A0A151S0L0_CAJCA Universal stress protein A-like protein; Found in the gene: LotjaGi1g1v0098700 LjG1.1_chr1 15056499 15060985 +
2 domain predictions
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LotjaGi1g1v0098700.2
n.a. Universal stress protein family protein; TAIR: AT3G03270.2 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein; TrEMBL-Plants: tr|I3SUJ0|I3SUJ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0098700 LjG1.1_chr1 15057167 15058569 +
2 domain predictions
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LotjaGi1g1v0138200.1
n.a. Universal stress protein; TAIR: AT1G09740.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein; TrEMBL-Plants: tr|I3S7B1|I3S7B1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0138200 LjG1.1_chr1 22557590 22565122 +
2 domain predictions
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LotjaGi1g1v0138200.2
n.a. Universal stress protein; TAIR: AT1G09740.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein; TrEMBL-Plants: tr|I3S7B1|I3S7B1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0138200 LjG1.1_chr1 22557683 22561571 +
2 domain predictions
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LotjaGi1g1v0160300.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G44760.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05; TrEMBL-Plants: tr|I1MA31|I1MA31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0160300 LjG1.1_chr1 29621876 29624113 -
2 domain predictions
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LotjaGi1g1v0161800.1
n.a. Protein kinase family protein; TAIR: AT1G77280.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; Swiss-Prot: sp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1; TrEMBL-Plants: tr|A0A0L9V0C2|A0A0L9V0C2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0161800 LjG1.1_chr1 30473237 30479361 +
2 domain predictions
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LotjaGi1g1v0161800.2
n.a. Protein kinase family protein; TAIR: AT5G63940.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; Swiss-Prot: sp|Q5XF57|Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670; TrEMBL-Plants: tr|C6ZRR5|C6ZRR5_SOYBN Protein kinase family protein; Found in the gene: LotjaGi1g1v0161800 LjG1.1_chr1 30473472 30477063 +
2 domain predictions
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LotjaGi1g1v0204900.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G48960.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q59X23|PMT4_CANAL Dolichyl-phosphate-mannose--protein mannosyltransferase 4; TrEMBL-Plants: tr|A0A0B2RD80|A0A0B2RD80_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0204900 LjG1.1_chr1 44261849 44264602 -
2 domain predictions
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LotjaGi1g1v0204900.2
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G48960.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32; TrEMBL-Plants: tr|A0A0B2RD80|A0A0B2RD80_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0204900 LjG1.1_chr1 44262511 44264380 -
2 domain predictions
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LotjaGi1g1v0259800.1
n.a. Adenine nucleotide alpha hydrolases-like superfamily protein; TAIR: AT1G44760.1 Adenine nucleotide alpha hydrolases-like superfamily protein; Swiss-Prot: sp|Q8VYN9|PHO32_ARATH Universal stress protein PHOS32; TrEMBL-Plants: tr|I1MA31|I1MA31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0259800 LjG1.1_chr1 62960247 62967315 +
2 domain predictions
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LotjaGi1g1v0267300.1
n.a. Kinase family protein; TAIR: AT1G77280.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; Swiss-Prot: sp|Q9LV48|PERK1_ARATH Proline-rich receptor-like protein kinase PERK1; TrEMBL-Plants: tr|I1KAF1|I1KAF1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0267300 LjG1.1_chr1 65348522 65353248 +
2 domain predictions
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LotjaGi1g1v0321700.1
n.a. Kinase family protein; TAIR: AT1G77280.1 kinase with adenine nucleotide alpha hydrolases-like domain-containing protein; Swiss-Prot: sp|Q9ZUE0|PEK12_ARATH Proline-rich receptor-like protein kinase PERK12; TrEMBL-Plants: tr|I1JXZ6|I1JXZ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321700 LjG1.1_chr1 77263829 77268782 -
2 domain predictions
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LotjaGi1g1v0368500.2
n.a. Kinase, putative; TAIR: AT5G26150.2 protein kinase family protein; Swiss-Prot: sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35; TrEMBL-Plants: tr|I1JTY6|I1JTY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0368500 LjG1.1_chr1 84694558 84701846 -
2 domain predictions
 –