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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006527
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 169 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.973s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0071519.2
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249405 26252195 -
2 domain predictions
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Lj0g3v0071529.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249480 26252199 -
2 domain predictions
 –
Lj0g3v0071549.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26256479 26257957 -
2 domain predictions
 –
Lj0g3v0076849.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 29375282 29380018 -
2 domain predictions
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Lj0g3v0089439.1
n.a. F-box [Medicago truncatula] gi|358344573|ref|XP_003636363.1| chr0 36687577 36688554 -
2 domain predictions
 –
Lj0g3v0123479.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 55411828 55413887 -
2 domain predictions
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Lj0g3v0124049.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 55681113 55681879 -
2 domain predictions
 –
Lj0g3v0129159.2
n.a. F-box protein [Medicago truncatula] gi|357478417|ref|XP_003609494.1| chr0 58426647 58428558 -
2 domain predictions
 –
Lj0g3v0129159.3
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 58426647 58428573 -
2 domain predictions
 –
Lj0g3v0133829.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357477437|ref|XP_003609004.1| chr0 61275285 61275716 -
2 domain predictions
 –
Lj0g3v0141909.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 65503306 65504502 +
2 domain predictions
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Lj0g3v0144459.1
n.a. F-box protein [Medicago truncatula] gi|357505185|ref|XP_003622881.1| chr0 66403039 66403764 +
2 domain predictions
 –
Lj0g3v0167499.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502182848|ref|XP_004517007.1| chr0 79683605 79685196 -
2 domain predictions
 –
Lj0g3v0169159.1
n.a. F-box protein [Medicago truncatula] gi|358347576|ref|XP_003637832.1| chr0 80823539 80824311 -
2 domain predictions
 –
Lj0g3v0188089.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 91843133 91846076 -
2 domain predictions
 –
Lj0g3v0234699.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 121618257 121619563 -
2 domain predictions
 –
Lj0g3v0240829.1
n.a. F-box protein [Medicago truncatula] gi|357469757|ref|XP_003605163.1| chr0 125002409 125003674 -
2 domain predictions
 –
Lj0g3v0249489.1
n.a. F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|357500019|ref|XP_003620298.1| chr0 129295614 129296090 +
2 domain predictions
 –
Lj0g3v0251329.1
n.a. F-box protein [Medicago truncatula] gi|357483915|ref|XP_003612244.1| chr0 130358740 130362809 -
2 domain predictions
 –
Lj0g3v0254869.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 132330673 132332325 +
2 domain predictions
 –
Lj0g3v0268779.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 139188957 139191310 -
2 domain predictions
 –
Lj0g3v0270709.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357470217|ref|XP_003605393.1| chr0 140205886 140209328 +
2 domain predictions
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Lj0g3v0273509.1
n.a. class S F-box protein [Nicotiana alata] gi|148923044|gb|ABR18786.1| chr0 141781263 141782420 -
2 domain predictions
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Lj0g3v0288409.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 149866957 149869861 -
2 domain predictions
 –
Lj0g3v0288779.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 150043348 150044227 +
2 domain predictions
 –
Lj0g3v0289209.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357478415|ref|XP_003609493.1| chr0 150245841 150249222 -
2 domain predictions
 –
Lj0g3v0293669.1
n.a. F-box family protein [Medicago truncatula] gi|357483733|ref|XP_003612153.1| chr0 152503326 152503985 +
2 domain predictions
 –
Lj0g3v0297699.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357478415|ref|XP_003609493.1| chr0 154762526 154763245 -
2 domain predictions
 –
Lj0g3v0300979.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 156433070 156434997 -
2 domain predictions
 –
Lj0g3v0311259.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357505193|ref|XP_003622885.1| chr0 162514549 162519817 -
2 domain predictions
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Lj0g3v0322559.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357490589|ref|XP_003615582.1| chr0 168473019 168474251 -
2 domain predictions
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Lj0g3v0346489.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502155279|ref|XP_004510017.1| chr0 181768590 181776001 +
2 domain predictions
 –
Lj0g3v0346499.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502155279|ref|XP_004510017.1| chr0 181768590 181770071 +
2 domain predictions
 –
Lj0g3v0353949.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502167973|ref|XP_004514290.1| chr0 186372746 186374532 -
2 domain predictions
 –
Lj0g3v0355899.1
n.a. F-box family protein [Medicago truncatula] gi|357469505|ref|XP_003605037.1| chr0 187466262 187467909 +
2 domain predictions
 –
Lj1g3v3063830.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34870627 34879263 +
2 domain predictions
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Lj1g3v3064000.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr1 34947777 34949768 -
2 domain predictions
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Lj1g3v3064070.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr1 34961907 34963603 -
2 domain predictions
 –
Lj1g3v3075120.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34978950 34982616 +
2 domain predictions
 –
Lj1g3v3075150.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34983456 34985125 +
2 domain predictions
 –
Lj1g3v3076160.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X1 [Cicer arietinum] gi|502167889|ref|XP_004514274.1| chr1 34989310 34990407 -
2 domain predictions
 –
Lj1g3v3078350.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 35047044 35050254 +
2 domain predictions
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Lj1g3v4752900.1
n.a. F-box protein [Medicago truncatula] gi|357458437|ref|XP_003599499.1| chr1 56877187 56878346 +
2 domain predictions
 –
Lj1g3v5033370.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr1 61338448 61345437 -
2 domain predictions
 –
Lj2g3v0907520.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr2 13760516 13762786 +
2 domain predictions
 –
Lj2g3v1277420.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr2 20273871 20276123 +
2 domain predictions
 –
Lj2g3v1984680.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502124431|ref|XP_004498527.1| chr2 29149707 29150846 +
2 domain predictions
 –
Lj2g3v2085460.1
n.a. S-Locus F-box 3-S34 [Pyrus x bretschneideri] gi|451321023|emb|CCH26215.2| chr2 31246937 31248079 -
2 domain predictions
 –
Lj3g3v2575580.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356525096|ref|XP_003531163.1| chr3 31261730 31262882 +
2 domain predictions
 –
Lj3g3v2691900.1
n.a. F-box family protein [Medicago truncatula] gi|357469505|ref|XP_003605037.1| chr3 32741685 32745138 -
2 domain predictions
 –