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Lj1g3v3075120.1

Overview

Field Value
Gene ID Lj1g3v3075120
Transcript ID Lj1g3v3075120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32133
1 393 393 2.10E-97 –
PANTHER
PTHR32133:SF89
1 393 393 2.10E-97 –
Gene3D
G3DSA:1.20.1280.50
12 54 43 4.80E-11 –
SUPERFAMILY
SSF81383
12 64 53 1.83E-16
IPR001810
ProSiteProfiles
PS50181
12 58 47 12.067
IPR001810
Pfam
PF00646
15 56 42 5.50E-10
IPR001810
SMART
SM00256
18 58 41 1.80E-10
IPR001810
SUPERFAMILY
SSF81383
96 133 38 1.83E-16
IPR001810
TIGRFAM
TIGR01640
114 336 223 3.30E-21
IPR017451
Pfam
PF07734
226 352 127 7.10E-06
IPR006527

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj1g3v3075120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3075120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.