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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006674
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.598s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v1014300.1
n.a. PREDICTED: protein SAMHD1 homolog [Glycine max] gi|356571413|ref|XP_003553871.1| chr2 15514921 15522186 +
3 domain predictions
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Lj2g3v1193030.1
n.a. PREDICTED: HD domain-containing protein C4G3.17-like isoform X1 [Cicer arietinum] gi|502094750|ref|XP_004490290.1| chr2 18877073 18879557 +
3 domain predictions
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Lj2g3v1193040.1
n.a. PREDICTED: HD domain-containing protein 2-like [Glycine max] gi|356499996|ref|XP_003518821.1| chr2 18879868 18882327 +
2 domain predictions
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Lj3g3v3513750.1
n.a. Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|15220978|ref|NP_173176.1| chr3 42861030 42865446 +
3 domain predictions
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Lj3g3v3523890.1
n.a. Metal-dependent phosphohydrolase [Arabidopsis thaliana] gi|15220978|ref|NP_173176.1| chr3 42940619 42943257 +
3 domain predictions
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Lj6g3v1048960.1
n.a. PREDICTED: HD domain-containing protein 2-like [Glycine max] gi|356498793|ref|XP_003518233.1| chr6 11854265 11858900 -
3 domain predictions
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LotjaGi2g1v0247400.1
n.a. Metal-dependent phosphohydrolase HD domain-containing protein; TAIR: AT5G40270.1 HD domain-containing metal-dependent phosphohydrolase family protein; Swiss-Prot: sp|B0G107|SAMH1_DICDI Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog; TrEMBL-Plants: tr|A0A0L9VP01|A0A0L9VP01_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0247400 LjG1.1_chr2 71284083 71292600 +
2 domain predictions
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LotjaGi2g1v0285000.1
n.a. HD domain-containing protein 2; TAIR: AT1G26160.1 Metal-dependent phosphohydrolase; Swiss-Prot: sp|P87242|YC0H_SCHPO HD domain-containing protein C4G3.17; TrEMBL-Plants: tr|I3SNE6|I3SNE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0285000 LjG1.1_chr2 75800569 75806609 +
2 domain predictions
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LotjaGi3g1v0529100.1
n.a. Metal-dependent phosphohydrolase, HD subdomain; TAIR: AT1G17330.1 Metal-dependent phosphohydrolase; Swiss-Prot: sp|P54168|YPGQ_BACSU Uncharacterized protein YpgQ; TrEMBL-Plants: tr|V7ADP0|V7ADP0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0529100 LjG1.1_chr3 94578215 94585416 +
2 domain predictions
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LotjaGi6g1v0198900.1
n.a. HD domain-containing protein 2; TAIR: AT2G23820.2 Metal-dependent phosphohydrolase; Swiss-Prot: sp|Q1LUI2|HDDC2_DANRE HD domain-containing protein 2; TrEMBL-Plants: tr|I1JGU2|I1JGU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0198900 LjG1.1_chr6 49568193 49577182 +
2 domain predictions
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