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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006943
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.403s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008719.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508704358|gb|EOX96254.1| chr0 3538009 3540894 -
2 domain predictions
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Lj2g3v2414560.1
n.a. Uncharacterized protein TCM_042273 [Theobroma cacao] gi|508787425|gb|EOY34681.1| chr2 34291395 34293903 +
2 domain predictions
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Lj3g3v0425260.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508721529|gb|EOY13426.1| chr3 3848543 3853421 +
2 domain predictions
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Lj4g3v2618210.1
n.a. UNE1-like protein [Medicago truncatula] gi|357472897|ref|XP_003606733.1| chr4 35557455 35559743 -
2 domain predictions
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Lj6g3v0624130.1
n.a. Uncharacterized protein isoform 3 [Theobroma cacao] gi|508786569|gb|EOY33825.1| chr6 6196064 6198669 +
2 domain predictions
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LotjaGi1g1v0107600.1
n.a. DUF641 family protein; TAIR: AT2G30380.1 MYB family transcription factor; Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|I1MBK1|I1MBK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0107600 LjG1.1_chr1 16695530 16700312 -
2 domain predictions
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LotjaGi1g1v0602600.1
n.a. DUF641 family protein; TAIR: AT3G60680.1 DUF641 family protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9U6Z1|A0A0L9U6Z1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0602600 LjG1.1_chr1 114763092 114766073 +
2 domain predictions
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LotjaGi3g1v0040800.1
n.a. UNE1-like protein; TAIR: AT3G14870.1 hypothetical protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151SPA4|A0A151SPA4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040800 LjG1.1_chr3 4410311 4416278 +
2 domain predictions
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LotjaGi3g1v0040800.2
n.a. UNE1-like protein; TAIR: AT3G14870.1 hypothetical protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151SPA4|A0A151SPA4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040800 LjG1.1_chr3 4413510 4414883 +
2 domain predictions
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LotjaGi3g1v0436600.1
n.a. myosin-4 protein (DUF641); TAIR: AT2G45260.1 myosin-4 protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151UC96|A0A151UC96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0436600 LjG1.1_chr3 84794310 84797771 +
2 domain predictions
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LotjaGi3g1v0436600.2
n.a. myosin-4 protein (DUF641); TAIR: AT2G45260.1 myosin-4 protein (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A151UC96|A0A151UC96_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0436600 LjG1.1_chr3 84795820 84797124 +
2 domain predictions
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LotjaGi4g1v0380100.1
n.a. UNE1-like protein; TAIR: AT1G29300.1 intracellular protein transporter, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9TJZ4|A0A0L9TJZ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0380100 LjG1.1_chr4 75948595 75951071 -
2 domain predictions
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LotjaGi6g1v0134400.1
n.a. DUF641 family protein; TAIR: AT5G58960.2 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A072UXH5|A0A072UXH5_MEDTR DUF641 family protein; Found in the gene: LotjaGi6g1v0134400 LjG1.1_chr6 38763890 38769536 +
2 domain predictions
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LotjaGi6g1v0134400.2
n.a. DUF641 family protein; TAIR: AT5G58960.2 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|I1KYU1|I1KYU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134400 LjG1.1_chr6 38764784 38766690 +
2 domain predictions
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LotjaGi6g1v0134400.3
n.a. DUF641 family protein; TAIR: AT5G58960.1 glucose-6-phosphate isomerase, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9VCY9|A0A0L9VCY9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134400 LjG1.1_chr6 38764784 38766690 +
2 domain predictions
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