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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0380100 |
| Transcript ID | LotjaGi4g1v0380100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UNE1-like protein; TAIR: AT1G29300.1 intracellular protein transporter, putative (DUF641); Swiss-Prot: sp|Q9LXU9|IRKI_ARATH IRK-interacting protein; TrEMBL-Plants: tr|A0A0L9TJZ4|A0A0L9TJZ4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0380100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75948595..75951071) extracted from Lotus japonicus Gifu genome v1.2.
ATAGGGTCCACACTATCATCTCTCTGGGTAGCACTCCACTACAGGTATATTAATATTATTCCCAATAATGAATTGGTGAA CAAAAAGAAAAAAAGAAAAGCAGCAAAAATCAATGGCTTGTATGTCAAAGTTCTTGTACTACAAGCCTACTTCTTTCAAG TATTCACTATTTAACCAAATTTTTATCATCACAAAGCAAAACTAGTCTACTACCCTTTTTCTTTTCCCGCCCTTTAAAAA CACTACTTAGTTAATTAATCTTTCCACTTAGTTTCAATAATTCATCTTATATATTAATCTCACATAGCTATCTCTAGATA GAGAGAGTAGTCAAACATTTGTGCTTGCTTTTGAAACCAAGATCTTCTTTTGCTGCAAACATTTTCTCTCAGTATTCCAA TTAAACTCTTTCCCTTTGTTGGATTTTCATTGGTTTTTCTCTCAACAAACAAGCAAACAAACATTACCCTCAAACTCTTA TGCTTTGATCAACAAAAATGGAAACCATGAAACCCAAATCAGCAACCATCAACAGGAGCAAGAAACTGGCCAAGAAATTC CAGAAGGTGATTAGTCTCAAAAGTGCTTCCAAAATTGCTTCAAACAATGGCATTTGCATGCTCAACTCACATCACAAGGT AAAGGAAGATCATTTCACTGATGGCAAGCATGAAGAAAACAGAGCAAGAAACAGAGCAGTTATGGAGGCTCTCATTGCAA GGCTCTTTGCAGGTGTCACCACCATCAAAGCATCATATGCAGAGCTTCAAATGGCTCAGCATCCTTACAACAATGACTCC ATTCAAGCTTCAGATAAAGCAGTGGTGGATGAACTCAGAGCTATCTCAGAATTGAAGAGAAAGTTTCTGAAAAAAGAGCT TGATCTTTCACCTCAAGTCACCATAATGCTAGCAGAGATTCAAGAACAACAGAGTATCATGAAAACCTATGAAATCACCA TCAAGAGGCTTCAATCCGAGGTTGATGTCAGGGATTCCAACATCTCATCTCTCAAGAAAACACTTGAAGAACGCATTGCC TTCAACAGATCGCTTGAGAAGAAGCTGAACGCAAGTGGAGCTTTGTCAATCTTCGAAACTCTCAAACTTTCTGCGTTGAA TCCTACCCATTTTGTGCATTTTCTTCACCATGCTTTGAGATCGATCAGGGGTTTCGTTAAGGTGATGATTGCAGAAATGG AATCAGCTCATTGGGATCTTGAAGCTGCAGTGAAGTTCATCCATCCAAACGCAGTTTTCAGCAAACCAAGCCATAGAAGC TATGCATTTGAATCGTTTGTTTGCATAACAATGTTTGAAGGTTTCAACTATCCAAACTTCTCTGTTCCTGATAACCCTCT TCAGAAAAACCAAAACACTCAGAATCTCTGCTTTGAGAAATTCAAAAAGCTCAAATCATTGAATCCTAAACAGTACTTAG CCCACAATCCAAACTCATCTTTTGCTAGATTCTTGAAATCTAAGTATCTTCAAGTGGTTCATGCCAAAATGGAGTGTTCC TTGTTTGGAAACTTGAACCAGAGGAAGCTAGTGAACTCTGGAGGGTACCCAGATTCTGCTTTCTTTACAGCGTTTGCAGA AATGGCTAAAAGAGTGTGGACACTGCATTGGTTGGCAATGTCTTTTCAGGAAGATGTCACCATTTTTCAGGTGAAGAACA ACTCTAGATTCTCTGAGGTGTACATGGAAAGTGTCACAGAAGAACCAGTTTCATCTTCAGGGGAATCCTCTGATCCCAGC TCCGGCGAGCTTAGGGTGGTTTTCACGGTGGTGCCAGGTTTCAAAATTGGCAAAACAGTGTTGCAGAGTCAAGTTTACCT GTCTTTGGTGGATTCTCCGGGGAGTCGCTGATATATCATTACGAGTGTTTTAAATTGCGGTTGGCGTTGTATTGCTGAAT TGCGAACAAATGCGGGTAAATGCGACCACGATGCCATTTTGTGGCTGCAATTGCGGGTGCGGACTGCAATTTGGAACCAT GCTCATAATGAATTTTCAAGTATATACTGAGGGTTAGTTCTATGTTAAATGCTATAGTCATTTTTACTTGTAATAAGCAG GAAATGGTTAATAAACTATTTCTGTTTAATTAGGCATTTTTGAAGCTCTGATTGTACATTTAGCCTCAAAGTAGGGATGC TTCAAGTGCTCTACCATGGAAATTACAGTGCTATATACATTTGGTATACACAACTTTTGAACTTGTATGTTTTCTTCAGC TATCAGCAATATCAACTGTAAATTATCTTGTATAATTGTACTATACTGTAATCAGATTATTATTAGATTATTATCACAGT ACATTATCTTTGATAAGCTTAGATATATTCAGAGCATAGTCTGTACTATTAACTTGCTAATTTACTAAGCATAGCCTTGA ACTCTTTTTGATCAAATTTTGGAGTACCAGATCCCAATAATAAAGTAGAGATTAGAGTTTGTGGATATTTCAAGGAA
CDS sequence (LotjaGi4g1v0380100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCATGAAACCCAAATCAGCAACCATCAACAGGAGCAAGAAACTGGCCAAGAAATTCCAGAAGGTGATTAGTCT CAAAAGTGCTTCCAAAATTGCTTCAAACAATGGCATTTGCATGCTCAACTCACATCACAAGGTAAAGGAAGATCATTTCA CTGATGGCAAGCATGAAGAAAACAGAGCAAGAAACAGAGCAGTTATGGAGGCTCTCATTGCAAGGCTCTTTGCAGGTGTC ACCACCATCAAAGCATCATATGCAGAGCTTCAAATGGCTCAGCATCCTTACAACAATGACTCCATTCAAGCTTCAGATAA AGCAGTGGTGGATGAACTCAGAGCTATCTCAGAATTGAAGAGAAAGTTTCTGAAAAAAGAGCTTGATCTTTCACCTCAAG TCACCATAATGCTAGCAGAGATTCAAGAACAACAGAGTATCATGAAAACCTATGAAATCACCATCAAGAGGCTTCAATCC GAGGTTGATGTCAGGGATTCCAACATCTCATCTCTCAAGAAAACACTTGAAGAACGCATTGCCTTCAACAGATCGCTTGA GAAGAAGCTGAACGCAAGTGGAGCTTTGTCAATCTTCGAAACTCTCAAACTTTCTGCGTTGAATCCTACCCATTTTGTGC ATTTTCTTCACCATGCTTTGAGATCGATCAGGGGTTTCGTTAAGGTGATGATTGCAGAAATGGAATCAGCTCATTGGGAT CTTGAAGCTGCAGTGAAGTTCATCCATCCAAACGCAGTTTTCAGCAAACCAAGCCATAGAAGCTATGCATTTGAATCGTT TGTTTGCATAACAATGTTTGAAGGTTTCAACTATCCAAACTTCTCTGTTCCTGATAACCCTCTTCAGAAAAACCAAAACA CTCAGAATCTCTGCTTTGAGAAATTCAAAAAGCTCAAATCATTGAATCCTAAACAGTACTTAGCCCACAATCCAAACTCA TCTTTTGCTAGATTCTTGAAATCTAAGTATCTTCAAGTGGTTCATGCCAAAATGGAGTGTTCCTTGTTTGGAAACTTGAA CCAGAGGAAGCTAGTGAACTCTGGAGGGTACCCAGATTCTGCTTTCTTTACAGCGTTTGCAGAAATGGCTAAAAGAGTGT GGACACTGCATTGGTTGGCAATGTCTTTTCAGGAAGATGTCACCATTTTTCAGGTGAAGAACAACTCTAGATTCTCTGAG GTGTACATGGAAAGTGTCACAGAAGAACCAGTTTCATCTTCAGGGGAATCCTCTGATCCCAGCTCCGGCGAGCTTAGGGT GGTTTTCACGGTGGTGCCAGGTTTCAAAATTGGCAAAACAGTGTTGCAGAGTCAAGTTTACCTGTCTTTGGTGGATTCTC CGGGGAGTCGCTGA
Protein sequence (LotjaGi4g1v0380100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METMKPKSATINRSKKLAKKFQKVISLKSASKIASNNGICMLNSHHKVKEDHFTDGKHEENRARNRAVMEALIARLFAGV TTIKASYAELQMAQHPYNNDSIQASDKAVVDELRAISELKRKFLKKELDLSPQVTIMLAEIQEQQSIMKTYEITIKRLQS EVDVRDSNISSLKKTLEERIAFNRSLEKKLNASGALSIFETLKLSALNPTHFVHFLHHALRSIRGFVKVMIAEMESAHWD LEAAVKFIHPNAVFSKPSHRSYAFESFVCITMFEGFNYPNFSVPDNPLQKNQNTQNLCFEKFKKLKSLNPKQYLAHNPNS SFARFLKSKYLQVVHAKMECSLFGNLNQRKLVNSGGYPDSAFFTAFAEMAKRVWTLHWLAMSFQEDVTIFQVKNNSRFSE VYMESVTEEPVSSSGESSDPSSGELRVVFTVVPGFKIGKTVLQSQVYLSLVDSPGSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 452 | 452 | 8.2E-222 | – | |
| PANTHER | 1 | 452 | 452 | 8.2E-222 | ||
| Pfam | 65 | 189 | 125 | 8.7E-42 | ||
| Coils | 141 | 161 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to red or far red light | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. | ||
| Biological process | Negative gravitropism | The orientation of plant parts away from gravity. |
Expression pattern of LotjaGi4g1v0380100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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