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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007308
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.526s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007879.1
n.a. F2P16.20-like protein isoform 3, partial [Theobroma cacao] gi|508787291|gb|EOY34547.1| chr0 3083518 3090810 -
3 domain predictions
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Lj3g3v1581610.1
n.a. F2P16.20-like protein isoform 6 [Theobroma cacao] gi|508787294|gb|EOY34550.1| chr3 20177098 20181033 +
3 domain predictions
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LotjaGi3g1v0282700.1
n.a. RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative; TAIR: AT5G26760.2 RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein; Swiss-Prot: sp|F4K1B1|RPAP2_ARATH Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog; TrEMBL-Plants: tr|I1JGF0|I1JGF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0282700 LjG1.1_chr3 56739316 56746836 -
3 domain predictions
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LotjaGi3g1v0282700.2
n.a. RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative; TAIR: AT5G26760.2 RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein; Swiss-Prot: sp|F4K1B1|RPAP2_ARATH Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog; TrEMBL-Plants: tr|I1JGF0|I1JGF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0282700 LjG1.1_chr3 56740345 56746834 -
3 domain predictions
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LotjaGi5g1v0107900.1
n.a. RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative; TAIR: AT5G26760.2 RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein; Swiss-Prot: sp|F4K1B1|RPAP2_ARATH Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog; TrEMBL-Plants: tr|I1JGF0|I1JGF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0107900 LjG1.1_chr5 20493894 20503835 -
3 domain predictions
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