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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0282700 |
| Transcript ID | LotjaGi3g1v0282700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II subunit B1 CTD phosphatase RPAP2, putative; TAIR: AT5G26760.2 RNA polymerase II subunit B1 CTD phosphatase RPAP2-like protein; Swiss-Prot: sp|F4K1B1|RPAP2_ARATH Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog; TrEMBL-Plants: tr|I1JGF0|I1JGF0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0282700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56740345..56746834) extracted from Lotus japonicus Gifu genome v1.2.
CCTCACTCTCTCTGACTCCACGCCTTTCTTCCCCTTTCTCCCTCTGCTCCCGCCTCCACCGCATCCACCTCTGTCCCCGC CTTCCACCTCGACTCCGCCGCCTCTCTGCCAAGCCCCTCACTCTCTCCATCTCCGTCTGCAACGGCCGCAAGGGCCGCAC GTGCGGCGTCCGCTCCGCCAAGTTTCTCGGCCGTGTCCGCCTCACCGTTCACCTCAACACCGCCCTCTCACAGCACATTC CATAGTGGGTGGTTCAAATTGGCCAGGAACGGTGGTGAACCGGGTTCCTACTTCTTCTCCATCACTGGGTTTTTGAGTGA TTGAGAAACAAGGAAGAAATTTCAAGGTAATTGCTTAGAACCAGCTGTGAAGCACTGTAGTATGCAGGGTTGCAAGTCAA GTAGTGTTCTACTCTAGTCTCTTAATTTGGCATGTTTGATCCTTTTGGTGTTTGGAGTTAATCTCTGACTGCATGTTTAT ATAACATAATGAAACACTCATATGCTAGTTTGTGACATTTCTCTATCTTTTGTTTTGGTTTAGTAATATCTGTGTGTTGT TCACTTTTTAACAATGAACACTCTTTATAAGTTATGGTGAATGTGAATTTTGAGTAACTCAATGTGATATTCAAATATGA ACTAACACTCACCTAAGGGGAATGTTAAAAAGCAATGAAAGATTACTGAAATTGAAGAGTCTATTTGATTTAGTTATACT AAGTTAACTAATGGACAAAGAAATAGTGCAAGTGAAATAAAATTGCAGACCTAAAACTGATCATGGTGTGTTGGAAACCA GTAAAATTAGACTAGGTTAAATGTATGCCCATGTGTGTATTGGTAAGTGAGAGAGAGAGAGGATGGTAAAACATGTGTGA AGTTTCTTGAAAAGGGAGAGCATAAGGTCCTTGAAAGCACCCTTCATTTGCTCCTTGTCAAGTCATCTTCTCATCAAGCT GCTTATATTCTAACAAAACCTCTTGCTATTGGGCCATTTCATCAGAACTGGACAGGCATGGAATTGGACATTCACATTCA AGCTTTAAGGGGGTGTCACGATTATATTAGCTTAGTTCCTTAGTTAACAAGAAGCAGTAGCAATATCTTAGTTTCAGTTT AGTCAGCTAAGCTTTTCCCTCCAATTCTGTTTAGTTTTTCTTTAGTTGTTTTTCTGTTTAGCTGCTAGCATGTGCTAATC ACATTGTAAAGCCATACTTGTTAGGTTCACCATATATGAATAAAGAAGAGGGAACAGAATCAGTTACTTCAGTGATTCTC ACATTCTTTCTTTGTTAGTGATTTCCAACATCCCTTTGTCTCTTTTTGGAGATACATTACATTTGAAGCAATTTTTTGTA AAGAGAGTACATCAGAAATATTTTGGACTGTGTTGTGCCATTTGTTTTCTAGTTTAGATAGTCTTTTTCTTTTGGCTTTG TGATGCCTTCTTGTAATGACTCCATTTGCTTTTGTTTTTATCTTACCTTTCTTTTGATACTTTGCAGAAGCTTGGCACCT GTTGTGGAAAGGTACTTAGCTTGAGTTGAAAAAACAATAGCAGCTGAGTTGAAAAGGAGATTGCTTTCTTCCATCTTTGC TGGTCTCTTTCTCTATTGTTTTCCTCATGCTGGCTTGCACGCCTCTACTGATATGTTGACTATTTTTTGCACTTGTCTTT ACTAGTTAGTTTTAGTACTAGTTAGATTTGTTATAGTTCTTCTAGTCTATTCTGTTTTATTTCGGCTTTGCTATGTATTT TCCTTTGATGCTAAAACTCACTTGAGAGAGTGTGTTTTCAAGATCTCTTTTTTTTCTAATAAATGTTCATTTTTTAAAAA TATATGTACAGGTCAAATTAGTGTAAAAAAAGCGAAAGAAAAAAACATTTTACATCAGTTTTAAACAGAACTGATGTGGC AAGTACACATTTCACATCGGTTATCTGGTATAACCGATGTGAAATGTTTTTATTTTGGCACGTTTTTTACATCGGTTATC TGCTATAACCGATGTAAAAAAGTACTTACCACATCGGTTGTATAACCGATGTGAAAAGTTGAGGACATACCTCATCACCT TTTTTTACATCGGATGCAAACCGATGTGGAAAGTCAGAAATAACCGATGTAAAAAGTACTTTTTCTAGTAGTGATAACAC AATGGATTGCTCTATTTATGCCTTGAATTTTGAATTTTATTGGAATGTACTCAATCTAGTAACTTATGGGGGTTTTCCTT GTACATGATGCAATTTTCAGATACTTGGTTGCTTGTGAGGCTTTTGGTTCAATGGCAAAGGACCAACCTGTTTTTGTCAA AGATGCTGTTTTGAAATTGCAATTGTCCCTCTTTGAAGGCATCCGAAGCGAAGACCAGCTTTTTGCAGCTGGGTCTTTGA TATCGAGGAGTGACTATGAAGATGTTGTGACTGAGAGGTCCATTACAAATGTATGTGGTTATCCACTCTGCCAAAATGGT TTACCCTCCGATCGCCCCCGGAAGGGTAGATATCGGATTTCGCTGAAGGAGCACAAAGTTTATGATCTGCACGAGACGTA CATGTTTTGTTCTTCCACTTGTGTTGTTAACGGCAAAGCTTTTGCTGGGACCTTGCAAGATGAGAGGTGCCCGACTGTGG ACCCAGAGAAACTCAACGATGTTCTCAGGTTGTTTGAGAATTTGAATGCGGAACCTGTGGAGGATTTGGGGAAGGGTGGA GATTTAGGTTTGTCTGGCTTGAGAATCCAGGAGAAAACTGAGTCCAGCACTGGGGAGGTGTCCTTGGATCAGTGGCTTGG ACCTTCAAATGCAATTGAGGGTTATGTACCAAAGCAAAGAAAGAGTGATTCTAAGAGTTCTCAGAAAAATATCAAAAAAG GTGAGAATTTTATGGAACTCCTTAATAATTAAGACCCTAGGTAGTCAGATAGCCTTATGCAATTTCTTGCTTGAGATTGT CTTTGTTTATTGTATCAAATTCAATGTTTGGTCTATGGGTGATTCCGAGGACCGAATTTCTGTGAAATGGAATAATGAAG TGATAAATTCTTATCAGTTGTTATCAAATATCTGCCATGGCGCCGCCATGGCAGTTTCTCATGGCGGTTTTTTGGCTTTC CGCCATAGCCGATATCCCGCCATATGGCGGCCATATTCCGTCATATTCCGCCACATCCCGCCATATTCCGCCATTATTTA TCATGTATGGCGGGATTTCGGCTTTCCGCCATCCGCAATTAACAACACTGATTCTTATCCTTTTTCACTTTCCAATGAAG TGAGATTTGATTATGAATTGCAGGGTCCAAAGCTAGTCGTGGCAGGTTGAATGATGAAAAAAAATCAATATACAGTGAGA TGGACTTCATGAGTACTATAATTACGCAAGATGAGTATAGTGTTTCTAAAGTATCATCAGGTCAAACCGACATAACTGCT GATCAACAAATTAAGCCAGTGGCCAAATTGGAGGTGCCAAAAAAGGCTGATAAGGTTAGTAAAGATGATGATAGTGTACA AGATCTGTCTTCATCTTTCAAGAGTAGTCTAAATTTAAGTACCTCAGAAAAAGAGAAGGAAATAGATAAATCAGATGAAC CTGTTATCAAATCCTCTCTCAATCCTTCTGTTGAAAAGATAGCTGTTCATTCTTCCACCATGTCAGAAATACTTGATGTA GAACAAAATATTTCTGAAAGGAAATCAATACAACTCCAAGGGGAAACAAGCAGAGTTGCTGCTAATCAGAATGCCTCCAC CTCCAGTTTAGATCCTGTCAATGTTGAAGGGGAATTTCAAATAGAAAAAGAAACTGGATCATACAAGACTAGACCCAAAT CATCTCTTAAATCCACTGGTAAAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGATGAGAAAACCAACAGCTCTGGGAGT AAAGATCTTTGTTCTGTTAGAGAATTTGGAGATGGAGATATTAAAAAAGAATCTGATTTAGAGGGTAATATAGATGTTAC TGATGATGATGAAGATATGATACGTCGTGCATCAGCAGAAGCATGTGCAATTGCATTGAGCCAAGCATCAGAAGCAGTTG CATCTGGAGACTCAGATATCACTGATGCTGGTAATTACCATTTCTTTGAAAGGGCTTTCTATTCAAATATTAAATGATTC CTTGAATAATTTCTTGTCTGTCAATGAATCTTGTTGCAGTTTCTGAAGCTGGAATCATTATATTGCCATCTTCTCATGAT GTTGTTGAGGAAGGTACTATGGAGGATGTTGATATTCCAGAAACAGATGGAGTTACTCTGAAATGGCCTAGAAAGCCTGG AATTTCTGATTTTGACTTGTTTGACTCTGAAGACTCATGGCATGACCCTCCACCAGAGGGTTTCAGTTTGACTGTAAGTT TCTAGTAAGCATTTTTACAAATATTCAAACTGTGCAAGTTTTCATGGTACTCTGACATTCCTCATTTTTTCATAAAACTT TATTTCAGTTGTCACCTTTTGCATCTATGTGGAATGCCCTCTTTTCATGGACAACATCATCTTCTTTGGCATATATATAT GGGAGGGATGTAAGTTTTCATGAAGACTTTCTATCAGTTAACGGGAGAGAATATCCTTGCAAAATTATCTTGACAGATGG TCGGTCATCTGAAATAAAGCAAACTTTAGCCAGTTGTCTTGCTCGAGCTTTACCTGCAGTTGTCGCTGAGCTCAGGCTGC CAATTCCAGTATCTACCTTAGAGCAAGGGATGGTATGATTTTGAAGTTATCTGTCTATTTTAGTTTATGTTGTATTATAG TTGTTCTAAATTAAGTTCAGAACAGATTTATTACACTCTGGTAGGCATGGCCTAATTGATGTAATACTATTGATTTAGAT GTGTCTAATATGTTTGTCAACCCCATTACCCCAATTTTGATATGCAAATGGCAAATTCTGTTCATATGAAAAGATGAATC ATAATTTTAAGCATCACTTTAGAAATTTGTGAATGAAGGGGAGTCTTAATGCAATGTTATTGAATGTGAAATCTGCCTCT TGCAAGGTTAGGTTTTGGGTCTTTTGACCCTTAAGTGAACCCAACACGTGGTGGGATCTATACAGCACTAGGCTGCCTTC TTTTTCAAAGTTTAGCAATTCATGAGAGTTCATGGGTTGTGCATAGTCCAAAGATATAATCTTCATATCTGTGTTGTGGA AATATATTAAATATATCCAATTACTTGTTTATACGGATGAATTATATGGAAGTTCTCATAACTTTTTCTTAGGTATGCTT GCTGGATACAATGTCATTTGTGGATGCACTTCCAGCATTCAGAATGAAACAATGGCAAGTTGTTGTTCTTTTGTTCATTG ATGCGTTGTCCATTTGTAGAATACCTGCTCTTATCTCATACATGATGGATCGGAGGGACTTGTTTCACAAGGTGAGAGAC CCTTTGTTTTATTGTACTGATTTATTATTTTATGTACATGACTATATCAGGAATCTGATTGATACCCATGAAGCATTACA TAATGATGTTGGATTGCATAGATATCATGACGTAGAAAGCGTAAACCCTTATTCTGACAATGATCTTTTGGCTTAGGTAG TTCAGTTGAAGACTTGAAGTCTAATATATTCAATTTTCGATAATTTCATTTGCTAGCGTTTGTAACTTTTCATCTGGATT TCCCTTAACTCTTGATATTGATTCTGTTGTGAACTTAACTATATAAATACTAGGCTGCCTTGTACAGCTTACGCTTGATA GCCATATTTTATGATCCTATTATTTAGTTCATCTCATATGGTTATTCTCCCATGCAAACTTGAAATTCTTATTTCAAACT TTGGGCACTCCATCTTGTTTATTGAACGTACATGTTACTTGAAAAAGAAAACCCAACTTGGAAGTTTTCCTTTTACTATG ATTTCCATATAAACTTATCTATGATGGCTTGCAAAGATTCCTATAAGGCTAAGCTGGAAAATAGAGCTTAATGTTTACTA ATATGAAATTGTATAGTTTATCTTATGCCGCCTCTTGTAATAATTCACTCTACTCTCAAATTTGCTTACCATTGTTCTGG TGTTCGTTTTGATGAAACAGGTTCTGAATGGTTCCCAATTAGGTATGGAAGAGTACGAGGTTTTGAAGGATCTCATTATT CCACTTGGCAAAGCACCTCATTTCTCTTCTCAAAGGGGAGCGTGACGACACAAAATTTCAATCTTAATGGCCAAACACTG GGACTTCATGAAACACCTAGATATTTCTTTAATGATTGAGTGCAATATTTTTTTTCCTTTGGAGAAGTTACCTTTCCAGC ATTGAAGTGCTAGGAAATGATGAATGCAAAATTGGTATTCAAATTGACAATATTCTGAAGTTGTGTTCGAATTAAATGAC AGTTTATGGAATGTTGTGAGGCTGTCTCCTAGTTTTACTTCTTATAGAAACAATATGTCAGGTCAGGGGATAAAAGGACA AATATTCTTC
CDS sequence (LotjaGi3g1v0282700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGGACCAACCTGTTTTTGTCAAAGATGCTGTTTTGAAATTGCAATTGTCCCTCTTTGAAGGCATCCGAAGCGA AGACCAGCTTTTTGCAGCTGGGTCTTTGATATCGAGGAGTGACTATGAAGATGTTGTGACTGAGAGGTCCATTACAAATG TATGTGGTTATCCACTCTGCCAAAATGGTTTACCCTCCGATCGCCCCCGGAAGGGTAGATATCGGATTTCGCTGAAGGAG CACAAAGTTTATGATCTGCACGAGACGTACATGTTTTGTTCTTCCACTTGTGTTGTTAACGGCAAAGCTTTTGCTGGGAC CTTGCAAGATGAGAGGTGCCCGACTGTGGACCCAGAGAAACTCAACGATGTTCTCAGGTTGTTTGAGAATTTGAATGCGG AACCTGTGGAGGATTTGGGGAAGGGTGGAGATTTAGGTTTGTCTGGCTTGAGAATCCAGGAGAAAACTGAGTCCAGCACT GGGGAGGTGTCCTTGGATCAGTGGCTTGGACCTTCAAATGCAATTGAGGGTTATGTACCAAAGCAAAGAAAGAGTGATTC TAAGAGTTCTCAGAAAAATATCAAAAAAGGGTCCAAAGCTAGTCGTGGCAGGTTGAATGATGAAAAAAAATCAATATACA GTGAGATGGACTTCATGAGTACTATAATTACGCAAGATGAGTATAGTGTTTCTAAAGTATCATCAGGTCAAACCGACATA ACTGCTGATCAACAAATTAAGCCAGTGGCCAAATTGGAGGTGCCAAAAAAGGCTGATAAGGTTAGTAAAGATGATGATAG TGTACAAGATCTGTCTTCATCTTTCAAGAGTAGTCTAAATTTAAGTACCTCAGAAAAAGAGAAGGAAATAGATAAATCAG ATGAACCTGTTATCAAATCCTCTCTCAATCCTTCTGTTGAAAAGATAGCTGTTCATTCTTCCACCATGTCAGAAATACTT GATGTAGAACAAAATATTTCTGAAAGGAAATCAATACAACTCCAAGGGGAAACAAGCAGAGTTGCTGCTAATCAGAATGC CTCCACCTCCAGTTTAGATCCTGTCAATGTTGAAGGGGAATTTCAAATAGAAAAAGAAACTGGATCATACAAGACTAGAC CCAAATCATCTCTTAAATCCACTGGTAAAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGATGAGAAAACCAACAGCTCT GGGAGTAAAGATCTTTGTTCTGTTAGAGAATTTGGAGATGGAGATATTAAAAAAGAATCTGATTTAGAGGGTAATATAGA TGTTACTGATGATGATGAAGATATGATACGTCGTGCATCAGCAGAAGCATGTGCAATTGCATTGAGCCAAGCATCAGAAG CAGTTGCATCTGGAGACTCAGATATCACTGATGCTGTTTCTGAAGCTGGAATCATTATATTGCCATCTTCTCATGATGTT GTTGAGGAAGGTACTATGGAGGATGTTGATATTCCAGAAACAGATGGAGTTACTCTGAAATGGCCTAGAAAGCCTGGAAT TTCTGATTTTGACTTGTTTGACTCTGAAGACTCATGGCATGACCCTCCACCAGAGGGTTTCAGTTTGACTTTGTCACCTT TTGCATCTATGTGGAATGCCCTCTTTTCATGGACAACATCATCTTCTTTGGCATATATATATGGGAGGGATGTAAGTTTT CATGAAGACTTTCTATCAGTTAACGGGAGAGAATATCCTTGCAAAATTATCTTGACAGATGGTCGGTCATCTGAAATAAA GCAAACTTTAGCCAGTTGTCTTGCTCGAGCTTTACCTGCAGTTGTCGCTGAGCTCAGGCTGCCAATTCCAGTATCTACCT TAGAGCAAGGGATGGTATGCTTGCTGGATACAATGTCATTTGTGGATGCACTTCCAGCATTCAGAATGAAACAATGGCAA GTTGTTGTTCTTTTGTTCATTGATGCGTTGTCCATTTGTAGAATACCTGCTCTTATCTCATACATGATGGATCGGAGGGA CTTGTTTCACAAGGTTCTGAATGGTTCCCAATTAGGTATGGAAGAGTACGAGGTTTTGAAGGATCTCATTATTCCACTTG GCAAAGCACCTCATTTCTCTTCTCAAAGGGGAGCGTGA
Protein sequence (LotjaGi3g1v0282700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKDQPVFVKDAVLKLQLSLFEGIRSEDQLFAAGSLISRSDYEDVVTERSITNVCGYPLCQNGLPSDRPRKGRYRISLKE HKVYDLHETYMFCSSTCVVNGKAFAGTLQDERCPTVDPEKLNDVLRLFENLNAEPVEDLGKGGDLGLSGLRIQEKTESST GEVSLDQWLGPSNAIEGYVPKQRKSDSKSSQKNIKKGSKASRGRLNDEKKSIYSEMDFMSTIITQDEYSVSKVSSGQTDI TADQQIKPVAKLEVPKKADKVSKDDDSVQDLSSSFKSSLNLSTSEKEKEIDKSDEPVIKSSLNPSVEKIAVHSSTMSEIL DVEQNISERKSIQLQGETSRVAANQNASTSSLDPVNVEGEFQIEKETGSYKTRPKSSLKSTGKKKLSRSVTWADEKTNSS GSKDLCSVREFGDGDIKKESDLEGNIDVTDDDEDMIRRASAEACAIALSQASEAVASGDSDITDAVSEAGIIILPSSHDV VEEGTMEDVDIPETDGVTLKWPRKPGISDFDLFDSEDSWHDPPPEGFSLTLSPFASMWNALFSWTTSSSLAYIYGRDVSF HEDFLSVNGREYPCKIILTDGRSSEIKQTLASCLARALPAVVAELRLPIPVSTLEQGMVCLLDTMSFVDALPAFRMKQWQ VVVLLFIDALSICRIPALISYMMDRRDLFHKVLNGSQLGMEEYEVLKDLIIPLGKAPHFSSQRGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 638 | 638 | - | – | |
| Gene3D | 6 | 116 | 111 | 7.2E-16 | ||
| PANTHER | 8 | 697 | 690 | 2.1E-141 | ||
| ProSiteProfiles | 32 | 117 | 86 | 19.843 | ||
| Pfam | 36 | 107 | 72 | 5.0E-21 | ||
| MobiDBLite | 178 | 208 | 31 | - | – | |
| MobiDBLite | 257 | 294 | 38 | - | – | |
| MobiDBLite | 366 | 388 | 23 | - | – | |
| Phobius | 639 | 661 | 23 | - | – | |
| TMHMM | 639 | 661 | 23 | - | – | |
| Phobius | 662 | 705 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Catalysis of the reaction: phospho-(DNA-directed RNA polymerase II) + H2O = (DNA-directed RNA polymerase II) + phosphate. | ||
| Molecular function | RNA polymerase core enzyme binding | Interacting selectively and non-covalently with an RNA polymerase core enzyme, containing a specific subunit composition defined as the core enzyme. | ||
| Biological process | Dephosphorylation of RNA polymerase II C-terminal domain | The process of removing a phosphate group from an amino acid residue in the C-terminal domain of RNA polymerase II. Some dephosphorylation occurs during transcription while some may occur after the enzyme is released from the template in order to prepare it for the beginning of the transcription cycle again. RNA polymerase II with little or no phosphorylation is referred to as the hypophosphorylated or II(A) form. |
Expression pattern of LotjaGi3g1v0282700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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