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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010061
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We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.693s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v0388250.1
n.a. PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating] gi|356521227|ref|XP_003529258.1| chr4 5080918 5087263 -
4 domain predictions
2 GO terms
Lj6g3v2192260.1
n.a. PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating] gi|356524788|ref|XP_003531010.1| chr6 25301907 25308478 +
4 domain predictions
2 GO terms
LotjaGi1g1v0043100_LC.1
n.a. FAR1 DNA-binding domain protein; TAIR: AT5G64170.1 dentin sialophosphoprotein-like protein; Swiss-Prot: sp|P11862|GAS2_MOUSE Growth arrest-specific protein 2; TrEMBL-Plants: tr|A0A0B2RHZ3|A0A0B2RHZ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0043100_LC LjG1.1_chr1 5901638 5901951 +
2 domain predictions
2 GO terms
LotjaGi2g1v0071000_LC.1
n.a. FAR1 DNA-binding domain protein; TAIR: AT2G36380.1 pleiotropic drug resistance 6; Swiss-Prot: sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34; TrEMBL-Plants: tr|A0A0B2RHZ3|A0A0B2RHZ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0071000_LC LjG1.1_chr2 17512406 17512779 +
2 domain predictions
2 GO terms
LotjaGi3g1v0294000_LC.1
n.a. FAR1 DNA-binding domain protein; TAIR: AT1G54010.1 GDSL-like Lipase/Acylhydrolase superfamily protein; Swiss-Prot: sp|O75309|CAD16_HUMAN Cadherin-16; TrEMBL-Plants: tr|A0A0S3S7D4|A0A0S3S7D4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0294000_LC LjG1.1_chr3 60135127 60135525 -
2 domain predictions
2 GO terms
LotjaGi4g1v0040900.1
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|I1KL66|I1KL66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040900 LjG1.1_chr4 4817994 4829485 -
4 domain predictions
2 GO terms
LotjaGi4g1v0040900.2
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|I1KL66|I1KL66_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040900 LjG1.1_chr4 4818390 4829373 -
4 domain predictions
2 GO terms
LotjaGi4g1v0040900.3
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|G7JU35|G7JU35_MEDTR Methylmalonate-semialdehyde dehydrogenase; Found in the gene: LotjaGi4g1v0040900 LjG1.1_chr4 4818587 4828091 -
4 domain predictions
2 GO terms
LotjaGi4g1v0040900.4
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|G7JU35|G7JU35_MEDTR Methylmalonate-semialdehyde dehydrogenase; Found in the gene: LotjaGi4g1v0040900 LjG1.1_chr4 4818587 4828694 -
4 domain predictions
2 GO terms
LotjaGi4g1v0336500_LC.1
n.a. Isocitrate dehydrogenase kinase/phosphatase; TAIR: AT1G54010.1 GDSL-like Lipase/Acylhydrolase superfamily protein; Swiss-Prot: sp|B7UPG7|ACEK_ECO27 Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A0B2QX27|A0A0B2QX27_GLYSO Protein FAR1-RELATED SEQUENCE 6; Found in the gene: LotjaGi4g1v0336500_LC LjG1.1_chr4 71688436 71688973 +
2 domain predictions
2 GO terms
LotjaGi5g1v0079700_LC.1
n.a. FAR1 DNA-binding domain protein; TAIR: AT4G27180.1 kinesin 2; Swiss-Prot: sp|B7UPG7|ACEK_ECO27 Isocitrate dehydrogenase kinase/phosphatase; TrEMBL-Plants: tr|A0A0S3S7D4|A0A0S3S7D4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0079700_LC LjG1.1_chr5 12937646 12940733 -
2 domain predictions
2 GO terms
LotjaGi6g1v0348500.1
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|A0A1J7GWW1|A0A1J7GWW1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0348500 LjG1.1_chr6 66127733 66137100 +
4 domain predictions
2 GO terms
LotjaGi6g1v0348500.2
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|A0A1J7GWW1|A0A1J7GWW1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0348500 LjG1.1_chr6 66128013 66134192 +
4 domain predictions
2 GO terms
LotjaGi6g1v0348500.3
n.a. Aldehyde dehydrogenase; TAIR: AT2G14170.1 aldehyde dehydrogenase 6B2; Swiss-Prot: sp|Q0WM29|MMSA_ARATH Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial; TrEMBL-Plants: tr|I3T9T5|I3T9T5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0348500 LjG1.1_chr6 66128484 66134192 +
4 domain predictions
2 GO terms