Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4578770.1

Overview

Field Value
Gene ID Lj1g3v4578770
Transcript ID Lj1g3v4578770.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum] gi|502110964|ref|XP_004493923.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF367
1 231 231 2.90E-234 –
PANTHER
PTHR13832
1 231 231 2.90E-234
IPR015655
SMART
SM00332
31 343 313 1.30E-68
IPR001932
ProSiteProfiles
PS51746
34 345 312 44.757
IPR001932
CDD
cd00143
35 345 311 1.38E-68 –
SUPERFAMILY
SSF81606
46 346 301 1.57E-60
IPR001932
Gene3D
G3DSA:3.60.40.10
63 346 284 1.70E-69
IPR001932
Pfam
PF00481
67 314 248 9.20E-40
IPR001932
ProSitePatterns
PS01032
71 79 9 –
IPR000222
PANTHER
PTHR13832:SF367
248 365 118 2.90E-234 –
PANTHER
PTHR13832
248 365 118 2.90E-234
IPR015655

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v4578770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4578770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.