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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017451
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 414 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 6.208s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0011449.1
n.a. F-box family protein [Theobroma cacao] gi|508720297|gb|EOY12194.1| chr0 4427000 4428133 +
2 domain predictions
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Lj0g3v0020859.1
n.a. F-box [Medicago truncatula] gi|357505587|ref|XP_003623082.1| chr0 8392540 8394593 -
2 domain predictions
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Lj0g3v0047969.1
n.a. n.a. chr0 16090025 16097887 +
2 domain predictions
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Lj0g3v0063959.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 21866064 21868137 +
2 domain predictions
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Lj0g3v0068009.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356571461|ref|XP_003553895.1| chr0 24252723 24255843 +
2 domain predictions
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Lj0g3v0071519.2
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249405 26252195 -
2 domain predictions
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Lj0g3v0071529.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 26249480 26252199 -
2 domain predictions
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Lj0g3v0076849.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 29375282 29380018 -
2 domain predictions
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Lj0g3v0087209.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 35378087 35379067 +
2 domain predictions
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Lj0g3v0089439.1
n.a. F-box [Medicago truncatula] gi|358344573|ref|XP_003636363.1| chr0 36687577 36688554 -
2 domain predictions
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Lj0g3v0090459.1
n.a. F-box [Medicago truncatula] gi|357505587|ref|XP_003623082.1| chr0 37277141 37278018 +
2 domain predictions
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Lj0g3v0103899.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 44369929 44371206 -
2 domain predictions
 –
Lj0g3v0107599.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 46427218 46429866 -
2 domain predictions
 –
Lj0g3v0115549.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 50790598 50791518 -
2 domain predictions
 –
Lj0g3v0121469.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 54184439 54185327 +
2 domain predictions
 –
Lj0g3v0121829.1
n.a. F-box family protein [Medicago truncatula] gi|357481667|ref|XP_003611119.1| chr0 54382502 54383490 +
2 domain predictions
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Lj0g3v0123479.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 55411828 55413887 -
2 domain predictions
 –
Lj0g3v0129159.3
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 58426647 58428573 -
2 domain predictions
 –
Lj0g3v0133829.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357477437|ref|XP_003609004.1| chr0 61275285 61275716 -
2 domain predictions
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Lj0g3v0134579.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 61739692 61740831 -
2 domain predictions
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Lj0g3v0141909.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 65503306 65504502 +
2 domain predictions
 –
Lj0g3v0144459.1
n.a. F-box protein [Medicago truncatula] gi|357505185|ref|XP_003622881.1| chr0 66403039 66403764 +
2 domain predictions
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Lj0g3v0146179.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 67243544 67245873 +
2 domain predictions
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Lj0g3v0147809.1
n.a. MdFBX20 [Malus domestica] gi|301069178|dbj|BAJ11968.1| chr0 68366549 68367442 +
2 domain predictions
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Lj0g3v0161809.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357506237|ref|XP_003623407.1| chr0 76186096 76186583 -
2 domain predictions
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Lj0g3v0162589.1
n.a. n.a. chr0 76730819 76734702 -
2 domain predictions
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Lj0g3v0167339.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 79577012 79579215 -
2 domain predictions
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Lj0g3v0167499.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502182848|ref|XP_004517007.1| chr0 79683605 79685196 -
2 domain predictions
 –
Lj0g3v0169159.1
n.a. F-box protein [Medicago truncatula] gi|358347576|ref|XP_003637832.1| chr0 80823539 80824311 -
2 domain predictions
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Lj0g3v0188089.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 91843133 91846076 -
2 domain predictions
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Lj0g3v0194019.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 94681433 94682569 +
2 domain predictions
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Lj0g3v0194029.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 94685360 94686562 +
2 domain predictions
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Lj0g3v0198009.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357478415|ref|XP_003609493.1| chr0 96469108 96471457 -
2 domain predictions
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Lj0g3v0199389.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X1 [Cicer arietinum] gi|502167889|ref|XP_004514274.1| chr0 97706367 97707379 +
2 domain predictions
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Lj0g3v0205909.1
n.a. PREDICTED: F-box protein At5g49610-like [Glycine max] gi|356529089|ref|XP_003533129.1| chr0 102520102 102521555 -
2 domain predictions
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Lj0g3v0206819.1
n.a. F-box [Medicago truncatula] gi|357505587|ref|XP_003623082.1| chr0 103150656 103156246 -
2 domain predictions
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Lj0g3v0213729.1
n.a. F-box protein [Medicago truncatula] gi|357505603|ref|XP_003623090.1| chr0 108001547 108002632 +
2 domain predictions
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Lj0g3v0213989.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 108293401 108294287 +
2 domain predictions
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Lj0g3v0214009.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 108299323 108301273 +
2 domain predictions
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Lj0g3v0214289.1
n.a. S-Locus F-box 3-S34 [Pyrus x bretschneideri] gi|451321023|emb|CCH26215.2| chr0 108493645 108494793 -
2 domain predictions
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Lj0g3v0214639.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 108787026 108792847 +
2 domain predictions
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Lj0g3v0227089.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356525096|ref|XP_003531163.1| chr0 117345082 117347040 +
2 domain predictions
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Lj0g3v0231099.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 119794498 119795782 -
2 domain predictions
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Lj0g3v0234699.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 121618257 121619563 -
2 domain predictions
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Lj0g3v0249489.1
n.a. F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|357500019|ref|XP_003620298.1| chr0 129295614 129296090 +
2 domain predictions
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Lj0g3v0251269.1
n.a. F-box family protein [Medicago truncatula] gi|357483733|ref|XP_003612153.1| chr0 130338547 130340994 -
2 domain predictions
 –
Lj0g3v0251319.1
n.a. F-box family protein [Medicago truncatula] gi|357483733|ref|XP_003612153.1| chr0 130351331 130353764 -
2 domain predictions
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Lj0g3v0251329.1
n.a. F-box protein [Medicago truncatula] gi|357483915|ref|XP_003612244.1| chr0 130358740 130362809 -
2 domain predictions
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Lj0g3v0254869.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 132330673 132332325 +
2 domain predictions
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Lj0g3v0255289.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 132591560 132593305 +
2 domain predictions
 –