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Lj0g3v0146179.1

Overview

Field Value
Gene ID Lj0g3v0146179
Transcript ID Lj0g3v0146179.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32133:SF89
1 234 234 4.80E-82 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 311 311 – –
PANTHER
PTHR32133
1 234 234 4.80E-82 –
ProSiteProfiles
PS50181
4 50 47 11.193
IPR001810
Gene3D
G3DSA:1.20.1280.50
8 59 52 6.40E-10 –
SUPERFAMILY
SSF81383
9 57 49 1.70E-10
IPR001810
Pfam
PF00646
10 44 35 9.80E-07
IPR001810
SMART
SM00256
10 50 41 1.90E-07
IPR001810
TIGRFAM
TIGR01640
110 320 211 6.70E-16
IPR017451
PANTHER
PTHR32133
250 336 87 4.80E-82 –
PANTHER
PTHR32133:SF89
250 336 87 4.80E-82 –
Phobius
TRANSMEMBRANE
312 330 19 – –
Phobius
CYTOPLASMIC_DOMAIN
331 344 14 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0146179.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0146179.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.