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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019193
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.982s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v0998890.1
n.a. CCP [Medicago truncatula] gi|357518209|ref|XP_003629393.1| chr4 14426284 14430367 +
2 domain predictions
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LotjaGi2g1v0056300_LC.1
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|Q9V727|ASX_DROME Polycomb protein Asx; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11440977 11451249 +
2 domain predictions
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LotjaGi2g1v0056300_LC.2
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|O83964|FTSK_TREPA DNA translocase FtsK; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11440977 11451249 +
2 domain predictions
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LotjaGi2g1v0056300_LC.3
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11440977 11451249 +
2 domain predictions
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LotjaGi2g1v0056300_LC.4
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|O83964|FTSK_TREPA DNA translocase FtsK; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11440977 11451249 +
2 domain predictions
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LotjaGi2g1v0056300_LC.8
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|Q7Z5N4|SDK1_HUMAN Protein sidekick-1; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11441000 11451044 +
2 domain predictions
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LotjaGi2g1v0056300_LC.9
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|O83964|FTSK_TREPA DNA translocase FtsK; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0056300_LC LjG1.1_chr2 11441000 11451044 +
2 domain predictions
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LotjaGi4g1v0121600.1
n.a. HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|Q6YI48|PTPRU_CHICK Receptor-type tyrosine-protein phosphatase U; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0121600 LjG1.1_chr4 17576788 17581205 +
3 domain predictions
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