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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0121600 |
| Transcript ID | LotjaGi4g1v0121600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; TAIR: AT3G26750.1 HECT-like ubiquitin-conjugating enzyme (E2)-binding protein; Swiss-Prot: sp|Q6YI48|PTPRU_CHICK Receptor-type tyrosine-protein phosphatase U; TrEMBL-Plants: tr|A0A0S3R4D5|A0A0S3R4D5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0121600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17576788..17581205) extracted from Lotus japonicus Gifu genome v1.2.
TTCTAGCACGAAGAGTATTTCTGGATGACCAAAAGTGCAATTAACCTTTTTTAACAACACCTCCTCTAATTCTGGGTTCA CCCTTTCTCTCCCAGTTTCTGAATAGTAGCAGCAGCAACTAGCAAGAGACTGAGACTGAAAATGGGGAGTGAGATTGAGA GTCCAGAAATGGATGAATGGCGTTTCACATGGGAATCACAGTCCCAAACCCCAACGCTTCGCTTACTCCTTCTCTTCCCC AAAACCCTCCTTCCTCCTCCCTCTCTCCAAACCGTTCGCCTTCACTCCTCACACTCTTTCCTCCTCATCACCCTCTCCTC CGCCGTTGTCTCCCTTAGGGTTCCGATTCCGGCAAGAGTCTTACTCGACGCCGACGCTCCTCCTACCTTCCGCGCACTCT CCGACCACATCGAGGTCAAGCTCCTCCTCCTCCTCCCCCTCCACCACCCTATCCTCTCCGCCCTCTCTCCTCACCCTTCC TCCCGCCCTCTCCCAATGGATTCCGGTAGGTCTCAATCCTCGATTCCTCTCGATCCTCGTCACGAGAAACAAGGACTGTG TGCTTATTTTCTGCTTCTTTTTTTTCGTGCAGATGTTGAAAATTTGGCTTCTCATGGAGAAGTTGATTTTTACTGTAGAA CTTGCGCTTTCAAGTTGACCAAACATCCACTCAGGTAACCAACCTCTCTGTCAATGTTTCTGTACATGAATGCAGTTAGT TTTCTCAAAACTGCGGATATTGAGTGATGAACTCAGATATTGAGAGAAGAAGGGAGAAGTTGAGAAAGAAAGTGATTCTC ATATTTCTGAATTAATTAATGTTCAACTGATACAGTTTAGGCTTATTGCTCCGTTTGGAAGAACTTATTTGAGCTTATCT GATAGCATAAGTGCTTGTGTAAGTGTTTGGGAGAGCTTATGCAAACAGCTTATGACCTACCATAAGCTGTTTTGAGCTTA TTTTCATAAGCTACTCAGGATAGCTCATGAAAAAGAGCTTATGCTGATATACAGCTTATTTTTAATTTATTTCAATACAT TTTGTAAAAGCGCTTATGGTGGTGCTTAATTAAGCTGTTTTTCCAAACGGGGCCTTAGACAGTGAATTGCCCACTTTACC TTCTAACTAACCAACCTTGAACTTACTAACAGAATTCTAACCACCTCTAATAGCTTCATAATATCTAATTCTAGCTTAGT CTAAAAGTGGAGGATCTTGATTTAAAAATAAATAAGTTTCTTCGAGATAAGACGAGACCGAATGATTGAAAATGCTAAAC TTGCATTGTTCTGTTAGTAGCAATCTTTATATACGCAGCAGTTAGTTACGAAGTAGAGTAAAAGTTAGTTGGTGAGTTAG AAACTAACCTAGCTGAGTTAGGAACTAATCATGTGACTAACTAAATCAGTTTGAGAACTAACTAATAAACTAGCAGAATT CTGGTTACATATATATAAGTCCAATGCAAAACGGTGTTATTGTTAAAAGGAGTGCACTGCTGGAATTCGTCATTCGTTTA TTCTTCATCTTGTATGATTGATAGCTTTTGGTTATATAGGCACTAGATGGCGTATGTATGATGAGGTTGAAATATAAATG CAGATGATAATTCTCATTGATATTGTTTGGTTTGGCCTTCTGGGGTTCACGTTGCTTATTTAGGAATTTTGTTGAAATGC CATCAGCGAATTGGAGGGAGGTGGCTGACAATTGGTTCGGGGCTTGTTGTTGTTCGTTTGGGGGTGTAAGCGAGAAGCTG GTTTTGAGGTATGTGAATTCTCACACGTGCGCGCCGGGGATTTGCCTTTTGAGTCCTGCGTCTGTCATTCTTTGTAAGGA TGATCTTGTGGAGTGTAATTTACATGCTGAAGGGTGTGGACAGCGAGAGTGTGGTTCTAAAGCAGATAACCTTGGAGATG ATGATGTTGTTGGCGATGGCAAGGCAAGTTTTGGATTGAATGAGGAAAGAACTTCAACCTGCGCTGATGCTGGTGAAGTA GCCTGTGCTTTTGAGGATAAGTTAAGGCTTGTGCATCCTGAGAATGAAAAGCTCTCTATGAATTTTAGAGGTGAAGGCAA TGACTTCTCTCATTCATGTACAGATTCTAATGGTGCTGAAGATGTGGCTAACACTCCTAGTTGTTGTGCTCATTCGATGG GCATTATCGGGGATGAAGACGGTGAACATCATTTATCTGGGACTGCTAGAAAGACAGAAACTATTGAAATCAGGGAAAAT CAGAAGCCTCTCCTCAATGGTTTTCTTGAAGATGTTTTCATGGCTAGATTATCAAATCTTTCAAAGGATATTGATTGGCA TGAATTCACATGCCCTCAATGCATGTCTCTCCTTGGAGCCTACCCATGTTGTGAGGGCTATGCACCTGTAGATGGTGGAG TAAGGTTGTTCAAATGCTATATTTCAACCTGTGTGCCAGTTGGAGGATCAGAGGACATTTTCAGGTTAGCAAAGAATGAA TAAATATATTTCTATTTCTTTTTCTTTATAATTCTGTTTCATAAAAAGTGATGACTTGGTTTTGTGCCGCTGTAACTTGA TTGCAGCTGACTGTAGTGAAGTAGGTCCAGTTAAACATTTTTGTTTCTGGGACTTGTTTAAGTGAAACTAATGTCTTGGT GGATAATTTGATTAAGCTAGTTGGCTAATTTTGGGAATAACAAGTGAGTATGATAAATAATAATTGGACAGTCGAAATTT TACACAGGAAGAAAAAGTCATGAATTCTTTCATTCATACTGAACTTGGTGGGAAAGAACTCAGACATGGGCCAATGAGTG TGAGTTGTCAATTACGGTATCTGTGTATGGCCCAATAAAAATATGAACCACTGTTTTATGACTTTATCTCTATTTTCTTT TATAATAGGGTGTGCAAAGGTTTTACCAAGTTACCAATCAATTTCAGACTTCTATCAACAAAAAGAACTAATAGTTGAAG ACATGGCCTTAGCATCTTGAAAATTCAGGGTTGGTTGATCATCAAATTAAAATATACTATAGGATGAACGTGAGAAAGAA AATTGTCTGTGCCATGCTGTTTCTTCTTGACCGTATGAATGAATGATCATGACTGCATCCACATTGTCTATTCCTGGCTA TTACTTTCTTTTTTGCAGTTTTAGTGAAAGATTAACCGTATTATATAATTTTCAATTTTTCTTTAAATTACTTTTGAAGT TTGCTTTTTGAATATGGATGTACTGAATAAATTTTAATGCATTATATTTTCACCAGCGAGTACACAATGGACAAAATGTT TGCAAATCAGTTGATGGGGTGTGCAACCGATGAATCATCATTCCGGTTTGTTGTTAGAGATCTGGCAACCAAATCCCCTG TCCTGCAAATCATTCTTTTAAATCCAGATACTTGGTCCTGTTCTGGTAATTGTTCTGTTGTTGAGGACGAAGACCCAGTT CCTAAATTACAGCTACGGCCCATCATCAAGGTGCTTTTTTCTGATTTTAGAGCTGCAACTGAATCTCAATTAAGGTCAGT CATCAAGTTATATCTTTTATCATGATGAATATGTTCATTGGCAAAATCTCTATATTATGTAAAGGTTTTTCTGTCTTTTT TTTCTTTTTTGTTCTTGAGCTTTAGAATTAGGAGCACCCGTTCTTTTTGCTTTTGTTTCTTTTGGTGTCTTGAAACTTGA GTGGAGTTTGTCTGCTACCTAGCGAATTATCATATAAGCTTGAACAAGAGACAAAAATAAACAAACCAAACATTCTTTCT CATGAATAGGAAAGGTATAGGTAGGAATTATTACTTGTTACTTACCTCTGAATTATCAATGGGTTCATATCATATATATA TATATATATATATATATATATATATATCTAATCTCTCATATTACTTGCGGCCCAATAATTTGTACAACTGGTGCAGGATG ATAGAAGAATGGGCAACAAAGAATTCAGCTGAAATTTTTTTCATGTTATCTCGTCAAATACAAGATTTGATGGGGTCGTT GATGACAGCAAAAGATATATACCCACCTTCATATGCTTCCTATCAAGGATTAATCTTGTCGTCTGTGCATCAGTAGGAAT CTACTCAACAATTTGGTGATCAAACTTCTTCACTAATAGGGCTAAGCAAAGGATGATTTTCTGTTTTGTATGCATTCAAC CAAGTTTGATAGCTAAAATTAATTTAACAGAAGCCAGAATGATATTGATTGATCAAATGGATAAATTAATTTTGTTAATT TATGTTTTAAGTTAAAAATGTCCTCACGCTTTTCCCATCTTCAAATGTGTGGCTAAATTTTGTTCTAGTTTTCAGGTTAT GTATCACTAGTATTAGGGGATTACTATTGGTACATCCAAAATTGCTATTTGCACGCTCTAGATAATGTCTAAATGACTTT AAAAAACTTGGGTTAAAC
CDS sequence (LotjaGi4g1v0121600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGTGAGATTGAGAGTCCAGAAATGGATGAATGGCGTTTCACATGGGAATCACAGTCCCAAACCCCAACGCTTCG CTTACTCCTTCTCTTCCCCAAAACCCTCCTTCCTCCTCCCTCTCTCCAAACCGTTCGCCTTCACTCCTCACACTCTTTCC TCCTCATCACCCTCTCCTCCGCCGTTGTCTCCCTTAGGGTTCCGATTCCGGCAAGAGTCTTACTCGACGCCGACGCTCCT CCTACCTTCCGCGCACTCTCCGACCACATCGAGGTCAAGCTCCTCCTCCTCCTCCCCCTCCACCACCCTATCCTCTCCGC CCTCTCTCCTCACCCTTCCTCCCGCCCTCTCCCAATGGATTCCGATGTTGAAAATTTGGCTTCTCATGGAGAAGTTGATT TTTACTGTAGAACTTGCGCTTTCAAGTTGACCAAACATCCACTCAGGAATTTTGTTGAAATGCCATCAGCGAATTGGAGG GAGGTGGCTGACAATTGGTTCGGGGCTTGTTGTTGTTCGTTTGGGGGTGTAAGCGAGAAGCTGGTTTTGAGGTATGTGAA TTCTCACACGTGCGCGCCGGGGATTTGCCTTTTGAGTCCTGCGTCTGTCATTCTTTGTAAGGATGATCTTGTGGAGTGTA ATTTACATGCTGAAGGGTGTGGACAGCGAGAGTGTGGTTCTAAAGCAGATAACCTTGGAGATGATGATGTTGTTGGCGAT GGCAAGGCAAGTTTTGGATTGAATGAGGAAAGAACTTCAACCTGCGCTGATGCTGGTGAAGTAGCCTGTGCTTTTGAGGA TAAGTTAAGGCTTGTGCATCCTGAGAATGAAAAGCTCTCTATGAATTTTAGAGGTGAAGGCAATGACTTCTCTCATTCAT GTACAGATTCTAATGGTGCTGAAGATGTGGCTAACACTCCTAGTTGTTGTGCTCATTCGATGGGCATTATCGGGGATGAA GACGGTGAACATCATTTATCTGGGACTGCTAGAAAGACAGAAACTATTGAAATCAGGGAAAATCAGAAGCCTCTCCTCAA TGGTTTTCTTGAAGATGTTTTCATGGCTAGATTATCAAATCTTTCAAAGGATATTGATTGGCATGAATTCACATGCCCTC AATGCATGTCTCTCCTTGGAGCCTACCCATGTTGTGAGGGCTATGCACCTGTAGATGGTGGAGTAAGGTTGTTCAAATGC TATATTTCAACCTGTGTGCCAGTTGGAGGATCAGAGGACATTTTCAGCGAGTACACAATGGACAAAATGTTTGCAAATCA GTTGATGGGGTGTGCAACCGATGAATCATCATTCCGGTTTGTTGTTAGAGATCTGGCAACCAAATCCCCTGTCCTGCAAA TCATTCTTTTAAATCCAGATACTTGGTCCTGTTCTGGTAATTGTTCTGTTGTTGAGGACGAAGACCCAGTTCCTAAATTA CAGCTACGGCCCATCATCAAGGTGCTTTTTTCTGATTTTAGAGCTGCAACTGAATCTCAATTAAGGATGATAGAAGAATG GGCAACAAAGAATTCAGCTGAAATTTTTTTCATGTTATCTCGTCAAATACAAGATTTGATGGGGTCGTTGATGACAGCAA AAGATATATACCCACCTTCATATGCTTCCTATCAAGGATTAATCTTGTCGTCTGTGCATCAGTAG
Protein sequence (LotjaGi4g1v0121600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSEIESPEMDEWRFTWESQSQTPTLRLLLLFPKTLLPPPSLQTVRLHSSHSFLLITLSSAVVSLRVPIPARVLLDADAP PTFRALSDHIEVKLLLLLPLHHPILSALSPHPSSRPLPMDSDVENLASHGEVDFYCRTCAFKLTKHPLRNFVEMPSANWR EVADNWFGACCCSFGGVSEKLVLRYVNSHTCAPGICLLSPASVILCKDDLVECNLHAEGCGQRECGSKADNLGDDDVVGD GKASFGLNEERTSTCADAGEVACAFEDKLRLVHPENEKLSMNFRGEGNDFSHSCTDSNGAEDVANTPSCCAHSMGIIGDE DGEHHLSGTARKTETIEIRENQKPLLNGFLEDVFMARLSNLSKDIDWHEFTCPQCMSLLGAYPCCEGYAPVDGGVRLFKC YISTCVPVGGSEDIFSEYTMDKMFANQLMGCATDESSFRFVVRDLATKSPVLQIILLNPDTWSCSGNCSVVEDEDPVPKL QLRPIIKVLFSDFRAATESQLRMIEEWATKNSAEIFFMLSRQIQDLMGSLMTAKDIYPPSYASYQGLILSSVHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 551 | 545 | 5.5E-110 | ||
| Pfam | 42 | 545 | 504 | 8.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0121600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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