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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR019378
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 129 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.516s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036819.1
n.a. Calcium ion binding [Theobroma cacao] gi|508785034|gb|EOY32290.1| chr0 11831934 11834260 +
2 domain predictions
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Lj0g3v0048529.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356502569|ref|XP_003520091.1| chr0 16349457 16356605 -
2 domain predictions
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Lj0g3v0109639.1
n.a. DUF246 domain-containing protein [Medicago truncatula] gi|357476829|ref|XP_003608700.1| chr0 47463637 47470028 +
2 domain predictions
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Lj0g3v0109639.2
n.a. DUF246 domain-containing protein [Medicago truncatula] gi|357476829|ref|XP_003608700.1| chr0 47465451 47470028 +
2 domain predictions
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Lj0g3v0189039.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356507704|ref|XP_003522604.1| chr0 92432169 92440895 -
2 domain predictions
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Lj0g3v0190839.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356567568|ref|XP_003551990.1| chr0 93277523 93282939 +
2 domain predictions
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Lj0g3v0190839.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera] gi|225424631|ref|XP_002285492.1| chr0 93277771 93280877 +
2 domain predictions
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Lj0g3v0234879.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356520091|ref|XP_003528699.1| chr0 121700815 121702345 -
2 domain predictions
 –
Lj0g3v0284859.1
n.a. Auxin-independent growth promoter [Medicago truncatula] gi|357495627|ref|XP_003618102.1| chr0 147780966 147785826 -
2 domain predictions
 –
Lj0g3v0318289.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356494914|ref|XP_003516326.1| chr0 166200594 166204988 +
2 domain predictions
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Lj0g3v0318289.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356494914|ref|XP_003516326.1| chr0 166200594 166204988 +
2 domain predictions
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Lj0g3v0350719.1
n.a. expressed protein [Oryza sativa Japonica Group] gi|108708337|gb|ABF96132.1| chr0 184326234 184335464 +
2 domain predictions
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Lj0g3v0355969.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356567568|ref|XP_003551990.1| chr0 187512637 187521001 -
2 domain predictions
 –
Lj1g3v0250120.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356552922|ref|XP_003544811.1| chr1 2660881 2667415 +
2 domain predictions
 –
Lj1g3v0579590.1
n.a. ATP synthase subunit a chloroplastic [Medicago truncatula] gi|357450853|ref|XP_003595703.1| chr1 7173208 7178103 +
2 domain predictions
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Lj1g3v1303770.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356507475|ref|XP_003522491.1| chr1 15672240 15677981 -
2 domain predictions
 –
Lj1g3v1303770.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356507475|ref|XP_003522491.1| chr1 15672240 15677981 -
2 domain predictions
 –
Lj1g3v1514790.1
n.a. DUF246 domain-containing protein [Medicago truncatula] gi|357465109|ref|XP_003602836.1| chr1 17997531 17999288 +
2 domain predictions
 –
Lj1g3v1560070.1
n.a. PsRT17-1 like protein [Medicago truncatula] gi|357465261|ref|XP_003602912.1| chr1 18798132 18803167 -
2 domain predictions
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Lj1g3v2280640.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356508770|ref|XP_003523127.1| chr1 26783947 26790072 -
2 domain predictions
 –
Lj1g3v3078230.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356523666|ref|XP_003530457.1| chr1 35032283 35038896 +
2 domain predictions
 –
Lj1g3v4139320.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356499143|ref|XP_003518402.1| chr1 48952063 48952707 -
2 domain predictions
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Lj2g3v0451460.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356502569|ref|XP_003520091.1| chr2 6521805 6528953 +
2 domain predictions
 –
Lj2g3v0908540.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356520091|ref|XP_003528699.1| chr2 13767847 13768384 +
2 domain predictions
 –
Lj2g3v1108470.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356573599|ref|XP_003554945.1| chr2 17932673 17936251 -
2 domain predictions
 –
Lj2g3v1454940.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356531347|ref|XP_003534239.1| chr2 22880662 22885285 +
2 domain predictions
 –
Lj2g3v2001590.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356540530|ref|XP_003538741.1| chr2 29979899 29986465 -
2 domain predictions
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Lj2g3v2220780.1
n.a. Uncharacterized protein TCM_002454 [Theobroma cacao] gi|508701669|gb|EOX93565.1| chr2 32919505 32921977 +
2 domain predictions
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Lj3g3v0001060.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356521787|ref|XP_003529532.1| chr3 20082 24597 -
2 domain predictions
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Lj3g3v0464880.1
n.a. DUF246 domain-containing protein, partial [Medicago truncatula] gi|357438315|ref|XP_003589433.1| chr3 5380719 5384169 +
2 domain predictions
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Lj3g3v0893750.1
n.a. Growth regulator like protein [Medicago truncatula] gi|357457469|ref|XP_003599015.1| chr3 10775503 10778791 -
2 domain predictions
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Lj3g3v2054420.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356521787|ref|XP_003529532.1| chr3 26392663 26396274 +
2 domain predictions
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Lj3g3v2211450.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356519361|ref|XP_003528341.1| chr3 27393279 27396592 -
2 domain predictions
 –
Lj3g3v2211450.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356528958|ref|XP_003533064.1| chr3 27393279 27396592 -
2 domain predictions
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Lj3g3v3189650.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356507475|ref|XP_003522491.1| chr3 39404129 39409375 +
2 domain predictions
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Lj4g3v0643870.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356575943|ref|XP_003556095.1| chr4 10291108 10299212 +
2 domain predictions
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Lj4g3v0668030.1
n.a. GDP-fucose protein-O-fucosyltransferase [Medicago truncatula] gi|357448365|ref|XP_003594458.1| chr4 10846631 10848784 -
2 domain predictions
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Lj4g3v0668030.2
n.a. GDP-fucose protein-O-fucosyltransferase [Medicago truncatula] gi|357448365|ref|XP_003594458.1| chr4 10846631 10848784 -
2 domain predictions
 –
Lj4g3v2190420.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356547933|ref|XP_003542359.1| chr4 30233475 30241879 -
2 domain predictions
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Lj4g3v2604060.1
n.a. Calcium ion binding [Theobroma cacao] gi|508785034|gb|EOY32290.1| chr4 35047193 35057800 -
2 domain predictions
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Lj5g3v0370000.1
n.a. PsRT17-1 like protein [Medicago truncatula] gi|357465261|ref|XP_003602912.1| chr5 3496317 3501487 -
2 domain predictions
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Lj5g3v1014530.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356520091|ref|XP_003528699.1| chr5 16224917 16230732 -
2 domain predictions
 –
Lj5g3v1014530.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356520091|ref|XP_003528699.1| chr5 16224917 16232501 -
2 domain predictions
 –
Lj5g3v1014530.3
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356520091|ref|XP_003528699.1| chr5 16228753 16232501 -
2 domain predictions
 –
Lj5g3v2029480.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356507556|ref|XP_003522530.1| chr5 28682903 28690498 +
2 domain predictions
 –
Lj5g3v2029650.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356542834|ref|XP_003539870.1| chr5 28772095 28777172 +
2 domain predictions
 –
Lj5g3v2029650.2
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356542834|ref|XP_003539870.1| chr5 28775616 28777172 +
2 domain predictions
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Lj6g3v0574370.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356540237|ref|XP_003538596.1| chr6 5695061 5703210 +
2 domain predictions
 –
Lj6g3v1089070.1
n.a. GDP-fucose protein-O-fucosyltransferase [Medicago truncatula] gi|357514371|ref|XP_003627474.1| chr6 13207455 13210898 -
2 domain predictions
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Lj6g3v1317300.1
n.a. PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] gi|356530350|ref|XP_003533745.1| chr6 15622391 15625535 +
2 domain predictions
 –