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Lj0g3v0109639.1

Overview

Field	Value
Gene ID	Lj0g3v0109639
Transcript ID	Lj0g3v0109639.1
Related isoforms 1	Lj0g3v0109639.2
Lotus japonicus genome version	MG20 v3.0
Description	DUF246 domain-containing protein [Medicago truncatula] gi\|357476829\|ref\|XP_003608700.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	17	17	–	–
PIRSF	PIRSF009360 View details on PIRSF009360 Search for proteins/transripts with this domain View external data on PIRSF009360	6	485	480	6.60E-184	IPR024709 Show description in modal box View details on IPR024709 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31818:SF3 View details on PTHR31818:SF3 Search for proteins/transripts with this domain View external data on PTHR31818:SF3	17	506	490	0	–
PANTHER	PTHR31818 View details on PTHR31818 Search for proteins/transripts with this domain View external data on PTHR31818	17	506	490	0	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	18	40	23	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	20	42	23	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	41	537	497	–	–
CDD	cd11299 View details on cd11299 Search for proteins/transripts with this domain View external data on cd11299	101	422	322	2.91E-162	–
Pfam	PF10250 View details on PF10250 Search for proteins/transripts with this domain View external data on PF10250	101	417	317	2.70E-76	IPR019378 Show description in modal box View details on IPR019378 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	514	537	24	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of Lj0g3v0109639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0109639.1, powered by CORGI.

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