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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025476
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We have found 50 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.941s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0022079.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 8910163 8916990 -
2 domain predictions
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Lj0g3v0061109.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 20422837 20424294 +
2 domain predictions
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Lj0g3v0062089.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357521729|ref|XP_003631153.1| chr0 20843632 20844270 +
2 domain predictions
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Lj0g3v0121839.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 54397865 54401816 +
2 domain predictions
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Lj0g3v0131969.1
n.a. Helicase [Medicago truncatula] gi|357482535|ref|XP_003611554.1| chr0 60171983 60172379 -
2 domain predictions
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Lj0g3v0133739.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 61243388 61244110 +
2 domain predictions
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Lj0g3v0161509.1
n.a. helicase-like protein [Oryza sativa Japonica Group] gi|38424032|dbj|BAD01692.1| chr0 75982911 75986899 +
2 domain predictions
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Lj0g3v0207989.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357450461|ref|XP_003595507.1| chr0 104100132 104100841 -
2 domain predictions
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Lj0g3v0241029.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357477677|ref|XP_003609124.1| chr0 125093684 125098543 +
2 domain predictions
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Lj0g3v0241029.2
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357477677|ref|XP_003609124.1| chr0 125093684 125098543 +
2 domain predictions
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Lj0g3v0280379.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 145409866 145414461 -
2 domain predictions
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Lj0g3v0284349.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 147534387 147536814 +
2 domain predictions
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Lj1g3v1558960.1
n.a. Helicase-like protein [Medicago truncatula] gi|357467083|ref|XP_003603826.1| chr1 18717869 18718630 +
2 domain predictions
 –
Lj1g3v2979290.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr1 33904252 33904994 -
2 domain predictions
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Lj1g3v4081990.1
n.a. Helicase-like protein [Medicago truncatula] gi|357475319|ref|XP_003607945.1| chr1 48287805 48288748 +
2 domain predictions
 –
Lj1g3v5021200.1
n.a. Helicase-like protein [Medicago truncatula] gi|357473181|ref|XP_003606875.1| chr1 61269688 61272750 +
2 domain predictions
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Lj2g3v1695320.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr2 26243515 26248349 +
2 domain predictions
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Lj2g3v2537570.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr2 35079845 35086672 -
2 domain predictions
 –
Lj3g3v1788950.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr3 22736819 22741844 +
2 domain predictions
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Lj3g3v2720190.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr3 33337139 33337490 +
2 domain predictions
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Lj4g3v0472910.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr4 7094280 7094957 -
2 domain predictions
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Lj4g3v3016330.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357445805|ref|XP_003593180.1| chr4 40452930 40460652 +
2 domain predictions
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Lj5g3v0626570.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357521729|ref|XP_003631153.1| chr5 8415484 8416248 +
2 domain predictions
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Lj5g3v0626580.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357445805|ref|XP_003593180.1| chr5 8416306 8417510 +
2 domain predictions
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Lj5g3v1498300.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357521729|ref|XP_003631153.1| chr5 21926460 21930461 +
2 domain predictions
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Lj6g3v1370710.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357477577|ref|XP_003609074.1| chr6 16198841 16201061 +
2 domain predictions
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LotjaGi1g1v0376100_LC.1
n.a. DNA helicase homolog, putative; TAIR: AT5G28780.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|Q5W673|Q5W673_ORYSJ Putative helicase; Found in the gene: LotjaGi1g1v0376100_LC LjG1.1_chr1 85461113 85467682 -
2 domain predictions
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LotjaGi1g1v0410200_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT3G30730.1 hypothetical protein; Swiss-Prot: sp|Q923P0|COKA1_MOUSE Collagen alpha-1(XX) chain; TrEMBL-Plants: tr|A0A0R0K9R8|A0A0R0K9R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410200_LC LjG1.1_chr1 90090556 90095060 +
2 domain predictions
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LotjaGi1g1v0505700_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT3G15490.1 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q83WL3|RPP_XYLFT Putative replication protein PDa0002; TrEMBL-Plants: tr|A0A078JTI7|A0A078JTI7_BRANA BnaAnng28900D protein; Found in the gene: LotjaGi1g1v0505700_LC LjG1.1_chr1 102368923 102390636 -
2 domain predictions
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LotjaGi1g1v0533100_LC.1
n.a. DNA helicase homolog, putative; TAIR: AT5G28780.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|Q5W673|Q5W673_ORYSJ Putative helicase; Found in the gene: LotjaGi1g1v0533100_LC LjG1.1_chr1 106036659 106043109 -
2 domain predictions
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LotjaGi1g1v0549100_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT5G51840.1 junctophilin-like protein; Swiss-Prot: sp|Q161S5|UREF_ROSDO Urease accessory protein UreF; TrEMBL-Plants: tr|A0A1J6KT21|A0A1J6KT21_NICAT Putative diphthine methyl ester synthase; Found in the gene: LotjaGi1g1v0549100_LC LjG1.1_chr1 107902535 107917801 +
2 domain predictions
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LotjaGi1g1v0549100_LC.2
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT5G51840.1 junctophilin-like protein; Swiss-Prot: sp|Q161S5|UREF_ROSDO Urease accessory protein UreF; TrEMBL-Plants: tr|A0A1J6KT21|A0A1J6KT21_NICAT Putative diphthine methyl ester synthase; Found in the gene: LotjaGi1g1v0549100_LC LjG1.1_chr1 107908246 107917801 +
2 domain predictions
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LotjaGi2g1v0109500_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT1G61215.1 bromodomain 4; Swiss-Prot: sp|B8GKF9|KCY_METPE Cytidylate kinase; TrEMBL-Plants: tr|J3SIC4|J3SIC4_BETVU Putative PIF1 DNA helicase/replication protein A1-like protein; Found in the gene: LotjaGi2g1v0109500_LC LjG1.1_chr2 38130731 38131629 -
2 domain predictions
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LotjaGi2g1v0203800_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT5G35525.1 PLAC8 family protein; Swiss-Prot: sp|A1VS34|QUEF_POLNA NADPH-dependent 7-cyano-7-deazaguanine reductase; TrEMBL-Plants: tr|K7LUR3|K7LUR3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0203800_LC LjG1.1_chr2 64563784 64564274 +
2 domain predictions
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LotjaGi2g1v0372900_LC.1
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0K9R8|A0A0R0K9R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0372900_LC LjG1.1_chr2 86985795 86990487 +
2 domain predictions
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LotjaGi3g1v0417500_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT3G55260.1 beta-hexosaminidase 1; TrEMBL-Plants: tr|J3SIC4|J3SIC4_BETVU Putative PIF1 DNA helicase/replication protein A1-like protein; Found in the gene: LotjaGi3g1v0417500_LC LjG1.1_chr3 82403132 82412641 +
2 domain predictions
 –
LotjaGi3g1v0417500_LC.2
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT3G55260.1 beta-hexosaminidase 1; TrEMBL-Plants: tr|J3SIC4|J3SIC4_BETVU Putative PIF1 DNA helicase/replication protein A1-like protein; Found in the gene: LotjaGi3g1v0417500_LC LjG1.1_chr3 82403132 82412641 +
2 domain predictions
 –
LotjaGi3g1v0417500_LC.4
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A1D5SK39|A0A1D5SK39_WHEAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0417500_LC LjG1.1_chr3 82405953 82412520 +
2 domain predictions
 –
LotjaGi3g1v0417500_LC.5
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q0R4F1|PIF1_XENLA ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A1D5SK39|A0A1D5SK39_WHEAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0417500_LC LjG1.1_chr3 82406749 82412520 +
2 domain predictions
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LotjaGi4g1v0032000_LC.1
n.a. AT hook motif-containing protein, putative; TAIR: AT3G30730.1 hypothetical protein; Swiss-Prot: sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1; TrEMBL-Plants: tr|J3SIC4|J3SIC4_BETVU Putative PIF1 DNA helicase/replication protein A1-like protein; Found in the gene: LotjaGi4g1v0032000_LC LjG1.1_chr4 3937485 3941069 +
2 domain predictions
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LotjaGi4g1v0058700_LC.1
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0JRQ1|A0A0R0JRQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0058700_LC LjG1.1_chr4 7071032 7077725 -
2 domain predictions
 –
LotjaGi4g1v0115800_LC.1
n.a. DNA helicase homolog, putative; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0JRQ1|A0A0R0JRQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115800_LC LjG1.1_chr4 16795302 16800746 +
2 domain predictions
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LotjaGi4g1v0122400_LC.1
n.a. Helicase-like protein; TAIR: AT5G28780.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|Q5W673|Q5W673_ORYSJ Putative helicase; Found in the gene: LotjaGi4g1v0122400_LC LjG1.1_chr4 17652086 17658497 +
2 domain predictions
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LotjaGi4g1v0157200_LC.1
n.a. AT hook motif-containing protein, putative; TAIR: AT2G47590.1 photolyase/blue-light receptor 2; Swiss-Prot: sp|O29460|COFH_ARCFU FO synthase subunit 2; TrEMBL-Plants: tr|Q94LS7|Q94LS7_ORYSJ AT hook motif-containing protein, putative; Found in the gene: LotjaGi4g1v0157200_LC LjG1.1_chr4 27413565 27414092 -
2 domain predictions
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LotjaGi5g1v0120200_LC.1
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0K9R8|A0A0R0K9R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0120200_LC LjG1.1_chr5 25080051 25086872 +
2 domain predictions
 –
LotjaGi5g1v0120200_LC.2
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT5G04720.1 ADR1-like 2; Swiss-Prot: sp|Q9RNN8|SYA_ZYMMO Alanine--tRNA ligase; TrEMBL-Plants: tr|A0A078JTI7|A0A078JTI7_BRANA BnaAnng28900D protein; Found in the gene: LotjaGi5g1v0120200_LC LjG1.1_chr5 25080051 25086872 +
2 domain predictions
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LotjaGi5g1v0120200_LC.6
n.a. Helicase-like protein; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0K9R8|A0A0R0K9R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0120200_LC LjG1.1_chr5 25080386 25086656 +
2 domain predictions
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LotjaGi5g1v0355900_LC.1
n.a. DNA helicase homolog, putative; TAIR: AT5G28780.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|Q5W673|Q5W673_ORYSJ Putative helicase; Found in the gene: LotjaGi5g1v0355900_LC LjG1.1_chr5 67094936 67101506 -
2 domain predictions
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LotjaGi6g1v0032500_LC.1
n.a. AT hook motif-containing protein, putative, expressed; TAIR: AT3G30730.1 hypothetical protein; Swiss-Prot: sp|P97399|DSPP_MOUSE Dentin sialophosphoprotein; TrEMBL-Plants: tr|Q5W673|Q5W673_ORYSJ Putative helicase; Found in the gene: LotjaGi6g1v0032500_LC LjG1.1_chr6 6101799 6108173 +
2 domain predictions
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LotjaGi6g1v0160100_LC.1
n.a. PIF1-like helicase; TAIR: AT3G51690.1 PIF1 helicase; Swiss-Prot: sp|Q7ZV90|PIF1_DANRE ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A0R0K9R8|A0A0R0K9R8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0160100_LC LjG1.1_chr6 44091876 44095252 +
2 domain predictions
 –