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Lj4g3v3016330.1

Overview

Field Value
Gene ID Lj4g3v3016330
Transcript ID Lj4g3v3016330.1
Lotus japonicus genome version MG20 v3.0
Description ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357445805|ref|XP_003593180.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10492
321 1349 1029 0 –
Pfam
PF14214
367 549 183 1.20E-56
IPR025476
SUPERFAMILY
SSF52540
905 1115 211 1.52E-21
IPR027417
Pfam
PF05970
925 1291 367 6.80E-146
IPR010285
Gene3D
G3DSA:3.40.50.300
927 1056 130 3.50E-05
IPR027417
SUPERFAMILY
SSF52540
1062 1132 71 2.41E-44
IPR027417
Gene3D
G3DSA:3.40.50.300
1064 1127 64 3.70E-28
IPR027417
Gene3D
G3DSA:3.40.50.300
1171 1217 47 3.70E-28
IPR027417
SUPERFAMILY
SSF52540
1190 1222 33 2.41E-44
IPR027417
SUPERFAMILY
SSF52540
1256 1406 151 2.41E-44
IPR027417
Gene3D
G3DSA:3.40.50.300
1326 1379 54 3.70E-28
IPR027417

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000723
Biological process Telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences.
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v3016330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3016330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.