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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029489
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.584s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v0803050.1
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|356500631|ref|XP_003519135.1| chr5 11499189 11518097 +
2 domain predictions
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Lj5g3v1303350.1
n.a. O-linked GlcNAc transferase like protein [Medicago truncatula] gi|357441255|ref|XP_003590905.1| chr5 20329688 20338844 -
2 domain predictions
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Lj5g3v1303350.2
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like isoform X2 [Cicer arietinum] gi|502116696|ref|XP_004495555.1| chr5 20329688 20338844 -
2 domain predictions
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LotjaGi5g1v0099700.1
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927029 17946679 +
2 domain predictions
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LotjaGi5g1v0099700.2
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927738 17943832 +
2 domain predictions
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LotjaGi5g1v0099700.3
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927885 17945814 +
2 domain predictions
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LotjaGi5g1v0205100.1
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717525 50727076 -
2 domain predictions
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LotjaGi5g1v0205100.2
n.a. tetratricopeptide repeat (TPR)-containing protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50723575 -
2 domain predictions
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LotjaGi5g1v0205100.3
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50726534 -
2 domain predictions
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LotjaGi5g1v0205100.4
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50726534 -
2 domain predictions
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LotjaGi5g1v0205100.5
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50726534 -
2 domain predictions
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