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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0205100 |
| Transcript ID | LotjaGi5g1v0205100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tetratricopeptide repeat (TPR)-containing protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50717834..50723575) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCTCATTTTATTTTTGTTCTTAAAAATATTTCAGGAAGCTGTAAAACTAAAACCTTCTTTCCCTGATGCTTATCTG AACCTTGGGAATGTGTACAAGGTAAGAGGCTTAGTACGTTTGATTGGATGCAACTAGTACTTTGATTGGTATTCGTGGAA GCTTGAAAGGTTTTCTGGCCCTTTTCTCTTTAGGCTCTAGGGATGCCTCAAGAAGCTATTGCATGCTATCAACATTCTCT TCAAACACGACCAAACTATGCCATGGCTTATGGTGAGTTCTGTTGCTTTATTTCTTTACCTCTTGGGTGCTAGTTTTATT TTCCTTGAAAAAAATCTGTGCAAAGATATGGGTAGTTATTAATAGCATCCAGAGATCATAACGACATATCTGAATAGTTA TTAATGTGGTAGGTACGAATAATCGTTCCTTCAGAAAAAAAGTTTGGACACTTGTATAATCATTGCGCTACTGTTATAAT ATCATGTGATTGATGGTTTATGTTTCTTAATTCACTCACTAATGATTACATATCATGAAAGGCAATTGATTTTGTATTGG TTTATTTATTTTATTATATTATTGTTATGAGTCTTGCGACTTATTTTTCCTTACTTAATAAAACTTGTTAGGAAATAAGG TGTACTTTCCCTTTTTAATGTTGGAGAACGAGTTTCAAACTTTATATTGTCTCATTTTTTTTCAAGATATATTACATTAT TATGGCTGGTTCGGACTGGAGAGTCATTCTAGCATGAACATTTTTTCTGTGAATGGACAGTAACAATATATACGTAGTAA AACTGTGAATATATGTTTTTCGTATGTAGCAGATCCAAACATTCTTTTCACTTAAGTTTAACTATGTTCATTTAATCACC TCAAGCGTACTGTTAATGATTGGTACACAGGTAATTTGGCCAGTATATACTATGAGCAAGGTCAACTGGACATGGCAATT CTACACTATAAACAAGCTATTGGATGTGACCCCAGATTTTTGGAAGCTTACAATAATTTGGTTGGTTTCTTGTTGTCTTG GTTTAGTTTAAAATCCTAAATATGCAATTTTATATGCAATTGTACAATACTTAATTTGATTATCTTTTAGGGTAATGCTC TAAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATGTATGTTTTTTTTCCGTATCTTGTCTTCATATTTAT TACACACTTTTAATTGTTATGCTTCCATGTCCGCCAAAATCCTACTAAACTTTCTATTTTTGGGGGTGCAGCAATGCCTT TCATTGCAGGCTAACCATCCACAGGCTTTGACCAATCTTGGAAATATATACATGGAATGGTATGTTGCCCATCCGTCTTC ATGTCAATGGTAGTAATTTCTGTGGTTAATGGGGATTATGAGTTTTCTTGAATGAAATTGTTGTGATGCAGGAACATGGT AGCTGCTGCTGCTTCATATTATAAAGCTACACTGAGTGTGACCACTGGATTATCCGCTCCTTATAACAATTTTGCTATAA TCTATAAGCAGCAGGTATGAAATCCTCTAGCATAATTCCATCTATTTTATATATAATAATATGTTTTTATTTGTATCTGG TGTTGGTTTGAGTTAGCGTTCATATTGTTGATCAAATTGAAGGTTTATAGCACTACAGATGTATATTTATTTCTTGGACA AAATATTGTAGGGAAATTATGCAGATGCCATATCATGCTACAATGAGGTCCTCCGCATTGATCCCTTGGCTGCTGATGGT CTGGTAAATAGAGGGAATACATTTAAGGAGATTGGTAGAGTTAGTGATGCTATCCAGGATTACATACGTGCAATTACTGT CAGGCCTACTATGGCTGAAGCCCACGCTAATTTGGCGTCAGCTTATAAAGATAGGTATGGAAATATCTTTTACCTTGATT TGAAATTGATCCTGGAACTTCTTATCGTACAGGGATGGCTTATTTTCTTGTCCCTTTTCACTCTACTAAGCTGCATCGGA AGTTCAAATTTACTTCTATTGTTTAGATTGTATATATTACACTTTTACCTTACAACCACCTGTCTGTGACTTCTGTCAAC AATAAGATCTCAATGTACTTGGTCATCGTTTTAAGTTCATATAAATTATGTTTATTTCAGTGGACATGTTGAGGCTGCTG TGAAGAGCTATAAACAGGCATTGATTCTTCGTGCAGACTTTCCTGAAGCAACTTGCAATCTCCTACATACACTTCAGGTT TTCTCCCATCTGAATCATTTTTTACTTTATATTTTCTGTGTGCGTTTGGTGAATAACCTTTTTTAGAATTTTACTTCTAC CTGAACATGAATATTTTCTTGGTGATTGTATTCTCTCTCGAGCATTTAACTGGTGGTTGTATTGGGAGGTTTCTCTCTCA AACATTTACATCTTGCTGTTTGTCTGACCTGGTTGGACTATGATATTGTTCTGACAGCTCAATTTGGATATACTTTACGG AACAATGATTGAAGTCAAGATTAAATGGTTCACTATTTGTTAAAATGCATTGTTGTTCTTTGTCATTGTTAACTTTTTAG TCTTTTACTCTGCCCATGAATGAAGATGTTTGTGTCTTATTCTGTTTGTTTGTCTAATATATCTTAAATAGGTAGTGTAT TGTTGTTTGGTTTTCACTATGCTTTGCTCTGCTAATTTTATGACATAACCAGGGTTAATTGTGTTTGCAATGTTTTAGTT TATACTTCTTATTTTGGCTTTAATCAGTGCGATATTTTGCTATATTGCAGTGTGTCTGTTCTTGGGAGGATCGTGATAAA ATGTTCAAGGAGGTTGAAGGGATAATCAGGAGACAGATTAATGTTAGTAGCAATCCATATACCATTTCGTTTTTCTTTTT ATTAAATCAATATATGATATCATACTAGCATGTTTTTTTAGTGTGCTTCAATTATTATGATTTTCTGTTTCTCAGATGTC AGTTCTTCCAAGTGTCCAGCCTTTCCATGCAATAGCATATCCACTGGACCCCATGCTTGCTCTGGACATTAGGTATGATT GAGAGTTCATAAAACTAGGAAGACATGATAAAAAAAATAGAATGCCCTATAGTATACTCTTTTTTCTCTGCTCAGTTTAT AATGTCTTCTCTTCTCACTCTCTGCAGTCGAAAATATGCTGCACACTGCTCTGTAATTGCTTCCCGTTTTGCTCTTCCAC CATTCAGCCATCCCGCTTCTATTCCAATCAAGCGGGAGGGAGGTTACGAAAGACTAAGGGTTGGGTATGTTATAATTACT TCTCCTGAACTCAAAATAATGTTCTCTCCTTTCCTTTGTTGTTCTATTGGTACCAATTCTTTTCCTTGTTATATGGCCGA ATTTTTTGGATTGTAGGTATGTGAGTAGTGACTTTGGTAATCACCCCTTGTCACATCTCATGGGATCTGTTTTTGGTATG CATAATAGGAAGAATGTTGAGGTATTTACTTTGGTTCTATTCAATCTTTTTGACTTCGAAATACCCCCAATTTCTCTATT AAATATTGACTATCTATATATGTAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAGTGGAGACAGCGTATAC AGTCTGAAACAGAGCACTTTGTGGATGTATCTGCCATGTCATCGGATATGATAGCAAAAATGATCAATGAGGATAAAATA CAAGTCCTTGTCAATCTTAATGGTTATACGAAGGTAGCTCCCTGTCAATTAGTAACTCTTGTATGATCTCTTAAATAATC AATTTTCATAACTAATGCAGTTCTTCATTATATCAAAGTTTGTTTTGTTTTGCTTGTTATGATATGGGTTACTGAATCTT TACTCCCATTTATTTCCTGTTGTATGAAACCTTAATTGGATCCTGGTCTGATGAATATTCAGCTTGTGTAGGTATTTTTA TTGCATGATGAATTTCTCCTTTTTCTTTTGCAGGGTGCCAGAAATGAGATATTTGCTATGAAACCTGCACCTATTCAAGT TTCATATATGGGATTCCCTGGAACAACAGGGGCTTCTTACATAGACTATTTAGTCACTGATGAGGTGAGATATTTTGTGC TACCAGGCCAAATAATTAAGAGGGTTCATACATATTTATTATTTTATCTTACATGCTTTCTGATTTCTGAATTCTTATGA GTTATGACTTCTCTTGCAGTTCGTGTCCCCGTTACAGTATGCACACATTTATTCTGAAAAGATTGTCCACCTGCCCCATT GCTACTTTGTTAATGATTATAAACAGGTTATTTTTATGAACTTGTAGTGGAGAATGTTGTATTCAATTGTGTGATTGTTT TGTTAGCTGTGTATTTAGATGCGTGTTGCTGAATGTCTCCTCTTCATAATTTGTTTGTTCAGAAAAATCTGGATGTGTTG GACCCAAACTGCCAGCACAAACGATCAGATTATGGTCTACCTGAGGATAAATTTCTGTTCGCATGCTTCAATCAACTTTA CAAGATGGATCCTGATATATTTAACACATGGTAATGGCAGGAAGCTGTTATTACTTGTCCTGATAAGATATATGATTGCT TAATTATATTCCATTAATGTCTTCGACTTTCCCAATATTTTGCATCTTATGCTTTACATGTCTGCCTATGCTTGTCTTAT TTTAGGTGCAATATTCTTAAACGTGTACCCAACAGTGCACTTTGGCTCCTGCGATTTCCTGCAGCAGGCGAAATGAGACT GAGGGCATGTATGTGTAGTTGTTTGATAGTCTTTTCTTTGGTATTACTATTAGTAATGTCTACTCATTTTGACCAATGCT CCAGTGGGCGTTGTCGATGTCAAAACACTAATTTTTCTTTATGGCTTCCTTTCTAATTATTGTACTGCTTTCAGATGCTG TTGCACAAGGGGTACAGCCCGATCAAATAATTTTTACTGATGTTGCAATGAAGCAGGAACACATCAGACGGAGTTCTTTA GCAGACTTATTCCTTGACACGTACTTTCTTCTCTCTACTTGTTGTCTTGCTACTTGAATGTTCTGTGTGCATCCAGTTCC CTCCTCCCCAAAAATATAATGTTGTCCGCTTATGTGTGCTGATTTTCTTTTTCATGTTCTTCTGCTTACAAAATAATTTT ACTTTTGAGTTATTTGTCCTGATTATGTTTTCTTGTAGGCCTTTATGCAATGCACATACAACTGGAACAGATATATTATG GGCAGGCTTGCCAATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGAGTCGCTGGGTCACTCTGTCTCTCGACTGGAC TCGGGGAGGAGATGATTGTTAGCAGGTGAGTTTATGATTTAGTTGCCACATGCAATATTTGTTTTGATGATGATGACCAT TGTTTATGTTAATGTCCTGCTTGCTTAATTTTAAACGTGTGTGAATCCTTGTAGCATGAAAGAGTATGAAGAAAGGGCAG TATCACTAGCTCTGAATCGCCCGAAGCTTCAAGCTCTTACTAACAAGCTCAAAGCAATACGCACAACCTGCCCTCTATTC GACACAGCTCGCTGGGTGAGTTTGAAATTATATTTTTAAAACAAGTTAATAATAGTCATTTCCATTGCTGTACAGTTTAG TATTGTAAGGTTATGGTGAATGTTGCAGGTGAAGAATCTGGACAGAGCATTTTTCAAAATGTGGAATCTGCATTGCTCTG GCCAACGCCCACAGCATTTTAAGGTCACTGAAAATGATGTTGAATGCCCTTATGATAAATAG
CDS sequence (LotjaGi5g1v0205100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCAAGAAGCTATTGCATGCTATCAACATTCTCTTCAAACACGACCAAACTATGCCATGGCTTATGGTAATTTGGC CAGTATATACTATGAGCAAGGTCAACTGGACATGGCAATTCTACACTATAAACAAGCTATTGGATGTGACCCCAGATTTT TGGAAGCTTACAATAATTTGGGTAATGCTCTAAAAGATGTTGGCAGAGTGGAGGAAGCAATCCAGTGCTATAATCAATGC CTTTCATTGCAGGCTAACCATCCACAGGCTTTGACCAATCTTGGAAATATATACATGGAATGGAACATGGTAGCTGCTGC TGCTTCATATTATAAAGCTACACTGAGTGTGACCACTGGATTATCCGCTCCTTATAACAATTTTGCTATAATCTATAAGC AGCAGGGAAATTATGCAGATGCCATATCATGCTACAATGAGGTCCTCCGCATTGATCCCTTGGCTGCTGATGGTCTGGTA AATAGAGGGAATACATTTAAGGAGATTGGTAGAGTTAGTGATGCTATCCAGGATTACATACGTGCAATTACTGTCAGGCC TACTATGGCTGAAGCCCACGCTAATTTGGCGTCAGCTTATAAAGATAGTGGACATGTTGAGGCTGCTGTGAAGAGCTATA AACAGGCATTGATTCTTCGTGCAGACTTTCCTGAAGCAACTTGCAATCTCCTACATACACTTCAGTGTGTCTGTTCTTGG GAGGATCGTGATAAAATGTTCAAGGAGGTTGAAGGGATAATCAGGAGACAGATTAATATGTCAGTTCTTCCAAGTGTCCA GCCTTTCCATGCAATAGCATATCCACTGGACCCCATGCTTGCTCTGGACATTAGTCGAAAATATGCTGCACACTGCTCTG TAATTGCTTCCCGTTTTGCTCTTCCACCATTCAGCCATCCCGCTTCTATTCCAATCAAGCGGGAGGGAGGTTACGAAAGA CTAAGGGTTGGGTATGTGAGTAGTGACTTTGGTAATCACCCCTTGTCACATCTCATGGGATCTGTTTTTGGTATGCATAA TAGGAAGAATGTTGAGGTATTCTGTTATGCCTTGAGTCCAAATGATGGTACTGAGTGGAGACAGCGTATACAGTCTGAAA CAGAGCACTTTGTGGATGTATCTGCCATGTCATCGGATATGATAGCAAAAATGATCAATGAGGATAAAATACAAGTCCTT GTCAATCTTAATGGTTATACGAAGGGTGCCAGAAATGAGATATTTGCTATGAAACCTGCACCTATTCAAGTTTCATATAT GGGATTCCCTGGAACAACAGGGGCTTCTTACATAGACTATTTAGTCACTGATGAGTTCGTGTCCCCGTTACAGTATGCAC ACATTTATTCTGAAAAGATTGTCCACCTGCCCCATTGCTACTTTGTTAATGATTATAAACAGAAAAATCTGGATGTGTTG GACCCAAACTGCCAGCACAAACGATCAGATTATGGTCTACCTGAGGATAAATTTCTGTTCGCATGCTTCAATCAACTTTA CAAGATGGATCCTGATATATTTAACACATGGTGCAATATTCTTAAACGTGTACCCAACAGTGCACTTTGGCTCCTGCGAT TTCCTGCAGCAGGCGAAATGAGACTGAGGGCATATGCTGTTGCACAAGGGGTACAGCCCGATCAAATAATTTTTACTGAT GTTGCAATGAAGCAGGAACACATCAGACGGAGTTCTTTAGCAGACTTATTCCTTGACACGCCTTTATGCAATGCACATAC AACTGGAACAGATATATTATGGGCAGGCTTGCCAATGGTTACTCTGCCTCTTGAGAAAATGGCTACTAGAGTCGCTGGGT CACTCTGTCTCTCGACTGGACTCGGGGAGGAGATGATTGTTAGCAGCATGAAAGAGTATGAAGAAAGGGCAGTATCACTA GCTCTGAATCGCCCGAAGCTTCAAGCTCTTACTAACAAGCTCAAAGCAATACGCACAACCTGCCCTCTATTCGACACAGC TCGCTGGGTGAAGAATCTGGACAGAGCATTTTTCAAAATGTGGAATCTGCATTGCTCTGGCCAACGCCCACAGCATTTTA AGGTCACTGAAAATGATGTTGAATGCCCTTATGATAAATAG
Protein sequence (LotjaGi5g1v0205100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQEAIACYQHSLQTRPNYAMAYGNLASIYYEQGQLDMAILHYKQAIGCDPRFLEAYNNLGNALKDVGRVEEAIQCYNQC LSLQANHPQALTNLGNIYMEWNMVAAAASYYKATLSVTTGLSAPYNNFAIIYKQQGNYADAISCYNEVLRIDPLAADGLV NRGNTFKEIGRVSDAIQDYIRAITVRPTMAEAHANLASAYKDSGHVEAAVKSYKQALILRADFPEATCNLLHTLQCVCSW EDRDKMFKEVEGIIRRQINMSVLPSVQPFHAIAYPLDPMLALDISRKYAAHCSVIASRFALPPFSHPASIPIKREGGYER LRVGYVSSDFGNHPLSHLMGSVFGMHNRKNVEVFCYALSPNDGTEWRQRIQSETEHFVDVSAMSSDMIAKMINEDKIQVL VNLNGYTKGARNEIFAMKPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLQYAHIYSEKIVHLPHCYFVNDYKQKNLDVL DPNCQHKRSDYGLPEDKFLFACFNQLYKMDPDIFNTWCNILKRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMVTLPLEKMATRVAGSLCLSTGLGEEMIVSSMKEYEERAVSL ALNRPKLQALTNKLKAIRTTCPLFDTARWVKNLDRAFFKMWNLHCSGQRPQHFKVTENDVECPYDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 706 | 706 | 0.0 | – | |
| PANTHER | 1 | 706 | 706 | 0.0 | ||
| ProSiteProfiles | 1 | 223 | 223 | 54.567 | ||
| Gene3D | 1 | 28 | 28 | 5.2E-6 | ||
| SUPERFAMILY | 3 | 110 | 108 | 3.3E-27 | ||
| SMART | 20 | 53 | 34 | 1.4E-6 | ||
| ProSiteProfiles | 20 | 53 | 34 | 10.561 | ||
| Pfam | 28 | 68 | 41 | 2.7E-10 | – | |
| Gene3D | 29 | 58 | 30 | 2.7E-6 | ||
| ProSiteProfiles | 54 | 87 | 34 | 10.561 | ||
| SMART | 54 | 87 | 34 | 1.9E-6 | ||
| Gene3D | 59 | 121 | 63 | 3.6E-15 | ||
| SUPERFAMILY | 70 | 570 | 501 | 2.75E-63 | ||
| ProSiteProfiles | 88 | 121 | 34 | 6.52 | ||
| SMART | 88 | 121 | 34 | 8.0 | ||
| SMART | 122 | 155 | 34 | 8.1E-5 | ||
| Gene3D | 122 | 194 | 73 | 1.8E-17 | ||
| ProSiteProfiles | 122 | 155 | 34 | 10.355 | ||
| Pfam | 125 | 153 | 29 | 1.3E-5 | ||
| ProSiteProfiles | 156 | 189 | 34 | 9.352 | ||
| SMART | 156 | 189 | 34 | 0.0028 | ||
| Pfam | 163 | 204 | 42 | 2.4E-7 | – | |
| ProSiteProfiles | 190 | 223 | 34 | 9.116 | ||
| SMART | 190 | 223 | 34 | 0.0018 | ||
| Gene3D | 195 | 296 | 102 | 3.6E-25 | ||
| Gene3D | 302 | 482 | 181 | 6.3E-75 | – | |
| Pfam | 321 | 474 | 154 | 4.7E-73 | ||
| Pfam | 487 | 681 | 195 | 1.8E-72 | ||
| Gene3D | 498 | 652 | 155 | 2.3E-56 | – | |
| Gene3D | 653 | 698 | 46 | 1.4E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein O-linked glycosylation | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. | ||
| Molecular function | Transferase activity, transferring glycosyl groups | Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi5g1v0205100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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