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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR031052
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 168 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.649s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059989.1
n.a. Far1-related sequence 10 isoform 1 [Theobroma cacao] gi|508781702|gb|EOY28958.1| chr0 19927302 19930291 +
2 domain predictions
1 GO term
Lj0g3v0071399.1
n.a. FAR1-related protein [Medicago truncatula] gi|357490981|ref|XP_003615778.1| chr0 26178160 26181470 +
2 domain predictions
1 GO term
Lj0g3v0084509.1
n.a. far-red impaired response protein-like [Oryza sativa Japonica Group] gi|51535335|dbj|BAD38595.1| chr0 33635262 33636720 -
2 domain predictions
1 GO term
Lj0g3v0085139.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|359491925|ref|XP_002273512.2| chr0 34013556 34014155 -
2 domain predictions
1 GO term
Lj0g3v0094319.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Fragaria vesca subsp]. vesca] gi|470113813|ref|XP_004293114.1| chr0 39631974 39632601 -
2 domain predictions
1 GO term
Lj0g3v0126619.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon] gi|357116326|ref|XP_003559933.1| chr0 56965203 56966467 -
2 domain predictions
1 GO term
Lj0g3v0135969.1
n.a. FAR1-related sequence 5 isoform 4 [Theobroma cacao] gi|508775859|gb|EOY23115.1| chr0 62574764 62576555 +
2 domain predictions
1 GO term
Lj0g3v0136299.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Cicer arietinum] gi|502111329|ref|XP_004494023.1| chr0 62700354 62701538 -
2 domain predictions
1 GO term
Lj0g3v0170049.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 9-like isoform X1 [Cicer arietinum] gi|502100172|ref|XP_004491653.1| chr0 81383667 81390730 +
2 domain predictions
1 GO term
Lj0g3v0201649.1
n.a. PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Fragaria vesca subsp]. vesca] gi|470148328|ref|XP_004309720.1| chr0 99734309 99735655 -
2 domain predictions
1 GO term
Lj0g3v0224509.1
n.a. FAR1-related protein [Medicago truncatula] gi|357506585|ref|XP_003623581.1| chr0 115966749 115968501 -
2 domain predictions
1 GO term
Lj0g3v0232569.1
n.a. FAR1-related protein [Medicago truncatula] gi|357491091|ref|XP_003615833.1| chr0 120716225 120718246 -
2 domain predictions
1 GO term
Lj0g3v0248799.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 12-like [Vitis vinifera] gi|359488119|ref|XP_002273089.2| chr0 128936030 128937821 -
2 domain predictions
1 GO term
Lj0g3v0249079.1
n.a. FAR1-related protein [Medicago truncatula] gi|357437905|ref|XP_003589228.1| chr0 129106483 129108022 +
2 domain predictions
1 GO term
Lj0g3v0304669.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|225452218|ref|XP_002271204.1| chr0 158683441 158688221 +
2 domain predictions
1 GO term
Lj0g3v0321259.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Glycine max] gi|356535278|ref|XP_003536175.1| chr0 167741082 167742678 +
2 domain predictions
1 GO term
Lj0g3v0340839.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cicer arietinum] gi|502137833|ref|XP_004503202.1| chr0 178523489 178524337 +
2 domain predictions
1 GO term
Lj0g3v0363529.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Fragaria vesca subsp]. vesca] gi|470145901|ref|XP_004308570.1| chr0 191772159 191772844 -
2 domain predictions
1 GO term
Lj0g3v0363549.1
n.a. FAR1-related protein [Medicago truncatula] gi|357491613|ref|XP_003616094.1| chr0 191773707 191777088 -
2 domain predictions
1 GO term
Lj1g3v0162460.1
n.a. FAR1-related protein [Medicago truncatula] gi|357470459|ref|XP_003605514.1| chr1 1853748 1855770 -
2 domain predictions
1 GO term
Lj1g3v1363180.1
n.a. n.a. chr1 16356045 16361616 +
2 domain predictions
1 GO term
Lj1g3v1809910.1
n.a. n.a. chr1 21818377 21823401 -
2 domain predictions
1 GO term
Lj1g3v3556900.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|358344944|ref|XP_003636545.1| chr1 40823018 40823559 +
2 domain predictions
1 GO term
Lj1g3v4251260.1
n.a. n.a. chr1 50190988 50198617 -
2 domain predictions
1 GO term
Lj1g3v4251280.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356528708|ref|XP_003532941.1| chr1 50195744 50198203 +
2 domain predictions
1 GO term
Lj1g3v4467990.1
n.a. Os04g0316800 [Oryza sativa Japonica Group] gi|297602453|ref|NP_001052447.2| chr1 52372713 52375230 +
2 domain predictions
1 GO term
Lj2g3v1573090.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
1 GO term
Lj2g3v1573090.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356540888|ref|XP_003538916.1| chr2 25050422 25055080 -
2 domain predictions
1 GO term
Lj2g3v1695250.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera] gi|225433914|ref|XP_002267960.1| chr2 26173585 26176870 +
2 domain predictions
1 GO term
Lj2g3v2173070.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356554576|ref|XP_003545621.1| chr2 32663865 32664454 -
2 domain predictions
1 GO term
Lj2g3v2315090.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Fragaria vesca subsp]. vesca] gi|470113039|ref|XP_004292735.1| chr2 33576448 33577257 +
2 domain predictions
1 GO term
Lj2g3v2959580.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 3-like [Glycine max] gi|356499263|ref|XP_003518461.1| chr2 38321947 38330645 -
2 domain predictions
1 GO term
Lj2g3v3413360.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356553419|ref|XP_003545054.1| chr2 43175445 43180582 -
2 domain predictions
1 GO term
Lj3g3v0966020.1
n.a. FAR1-related protein [Medicago truncatula] gi|357506585|ref|XP_003623581.1| chr3 12963280 12964054 -
2 domain predictions
1 GO term
Lj3g3v1953520.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Glycine max] gi|356508152|ref|XP_003522824.1| chr3 25147818 25153555 -
2 domain predictions
1 GO term
Lj3g3v1993830.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356554576|ref|XP_003545621.1| chr3 25742673 25744541 +
2 domain predictions
1 GO term
Lj3g3v2027410.1
n.a. n.a. chr3 25946159 25949597 -
2 domain predictions
1 GO term
Lj4g3v0070730.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 8-like [Glycine max] gi|356555835|ref|XP_003546235.1| chr4 458000 463422 -
2 domain predictions
1 GO term
Lj4g3v0070880.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max] gi|356558023|ref|XP_003547308.1| chr4 471879 475670 -
2 domain predictions
1 GO term
Lj4g3v0119630.1
n.a. FAR1-related sequence 5 [Theobroma cacao] gi|508711715|gb|EOY03612.1| chr4 1072432 1073181 -
2 domain predictions
1 GO term
Lj4g3v0120440.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Cicer arietinum] gi|502100164|ref|XP_004491651.1| chr4 1344252 1344717 +
2 domain predictions
1 GO term
Lj4g3v0620710.1
n.a. FAR1-related protein [Medicago truncatula] gi|357470459|ref|XP_003605514.1| chr4 9727356 9729180 -
2 domain predictions
1 GO term
Lj4g3v1327720.1
n.a. FAR1-related protein [Medicago truncatula] gi|357463693|ref|XP_003602128.1| chr4 19617057 19620692 +
2 domain predictions
1 GO term
Lj4g3v1327730.2
n.a. n.a. chr4 19617437 19621134 -
2 domain predictions
1 GO term
Lj4g3v2120630.1
n.a. TPA: FAR1-domain family sequence [Zea mays] gi|414886878|tpg|DAA62892.1| chr4 29136216 29139690 +
2 domain predictions
1 GO term
Lj5g3v1003540.1
n.a. FAR1-related protein [Medicago truncatula] gi|357463693|ref|XP_003602128.1| chr5 15870405 15871611 -
2 domain predictions
1 GO term
Lj5g3v2027140.1
n.a. FAR1-related protein [Medicago truncatula] gi|357444047|ref|XP_003592301.1| chr5 28542557 28543304 -
2 domain predictions
1 GO term
Lj5g3v2027150.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] gi|356534155|ref|XP_003535623.1| chr5 28543517 28544060 -
2 domain predictions
1 GO term
Lj5g3v2110850.1
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 12-like [Vitis vinifera] gi|359488119|ref|XP_002273089.2| chr5 30165602 30169520 +
2 domain predictions
1 GO term
Lj5g3v2110850.2
n.a. PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera] gi|225452218|ref|XP_002271204.1| chr5 30165602 30169520 +
2 domain predictions
1 GO term