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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR032008
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.981s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2326690.1
n.a. RING/U-box superfamily protein isoform 1 [Theobroma cacao] gi|508786463|gb|EOY33719.1| chr1 27544378 27549699 +
2 domain predictions
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Lj5g3v0297310.1
n.a. Zinc finger, RING-type [Medicago truncatula] gi|87241421|gb|ABD33279.1| chr5 2804207 2808195 +
2 domain predictions
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LotjaGi1g1v0441500.1
n.a. RING/U-box superfamily protein; TAIR: AT2G38185.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34; TrEMBL-Plants: tr|K7MTI8|K7MTI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0441500 LjG1.1_chr1 93830576 93836202 +
2 domain predictions
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LotjaGi5g1v0031800.1
n.a. E3 ubiquitin ligase-like protein; TAIR: AT2G38185.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q24306|DIAP1_DROME Death-associated inhibitor of apoptosis 1; TrEMBL-Plants: tr|G7I297|G7I297_MEDTR Ubiquitin-protein ligase, putative; Found in the gene: LotjaGi5g1v0031800 LjG1.1_chr5 5245068 5249204 +
2 domain predictions
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LotjaGi6g1v0113400.1
n.a. RING/U-box superfamily protein; TAIR: AT5G01450.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q5M7X9|MUL1A_DANRE Mitochondrial ubiquitin ligase activator of nfkb 1-A; TrEMBL-Plants: tr|A0A151U9V5|A0A151U9V5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0113400 LjG1.1_chr6 27191265 27201134 -
2 domain predictions
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