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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0031800 |
| Transcript ID | LotjaGi5g1v0031800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin ligase-like protein; TAIR: AT2G38185.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q24306|DIAP1_DROME Death-associated inhibitor of apoptosis 1; TrEMBL-Plants: tr|G7I297|G7I297_MEDTR Ubiquitin-protein ligase, putative; Found in the gene: LotjaGi5g1v0031800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5245068..5249204) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGTTGGTTCAATAGAACGCTAGAAATCAGCAACATACTTCTAAGCTATAATTTTAAGCTACAAGTCTTCTCTTGTTC TTCTTCTCTGATCAATTCATTTTCCTCCTCTGAAAGCCACTATCAATACATTGGCTGTTATGTGAGTGAAATCTCACATC AACAAAGGGAAATTAAGGGGCCATGCAGAGGACACTATGGTTGCATACTTCCACAACATATCACCACCCCTTGATGGATC CAACTCCAGCATATCATCGATGGCATGACGCTTGGGCGTGCATTCTTGCTACTCTCATCATTTATATTACCGGCATGTAA TTTTTCATCATCTTATTTTTAACATGTTTGGATAGCTTCTCTCTCACTAGAATCGATTATGAAATTTAGAAGTTACTCTC CAGAATTGAGATTTGAATTGCATGCAGTCGCATAGTTCATAAATTTATGCAATCAATGAATCAAAGTCCGTCTGAGCTTG ATCGGACGGCTTAAATTTCTCTATCGTCCTATGATTTTGGTGAAAAATATGAGCCACCCGATTTTGATATTATGGTCTAG ATTTCGTGCGTAAATGTAGGAAAATCTAGAATTGATGCTCTCATTCAGAATAAATTGTAGAAGGTTTCCAAACATGCACT TATTATATATGTGTCGTGCACCTCCCTTGACTCATGTTTCTGAAACATTTGCCACATTGTTTTTCCATTTTGCTTTTGCA GTTTCAGCTAGTCTCATGTATGGCTACTATGGCGATTCTCGCTTGTTGCTTGGCCCCAGCTCATCGCGTTTGGTAAAGGC AAACTCTGTTTTGGTAGATAGAATTGAAGTAACTAGTGAGTATAGTAATGATCTTTTGCTATATGGGTTCCATGAAAGGC CTGAGTTAAGCTCCCAAGCAAATTGGTCTACCTCAAAGTTTCTAGATGTTTCAGCATATAGTCGCAAGGTAACAAACATT GTGCTATCTTTCACTTAAGTGTGTGTTTGTTTTGGGTCTTGAGACATAATTGGAAAAGCATAATTTTTTGCATGTTTGAA TCTGTCATAATCAATTACAGCATTCAGATTTCAGAAGCTAGTCACAAAAAATTCTTCCCATAATTATAATTTTAACTTTT GAATTAGTTGTAAAAGAATTTTCAATCATGCATCAAAAGTTGATTTTAACGCCTATGACGTTAACTTCAATGGAAACACA AACACACACCAAAATTTTTCATTGCCCATAATAAATTATTTAACAATGGTCCACATTTTAGGAGATAAAAGTGTAAGAAA TCCTGTACTGAAAAATCAACAGCTATACTAAATAAAATACACACACATTAATATTATAAAAAATAATGATACTGTAATAA AATGCATACATATGTAATAATAAAATACCAAGTTATTAAGTTTTGTCTATTAACAAGAGGGTCAGCCTCGGCAGAACGGT AAAGTTGTTGCTATGTGACTTTGTAGTCAAACCTAGCGCAAAGCGTTTTTTTTCTATTAAAAGTTATAATTCTGCATTTT ATCTTTAATTATTAGAGTAGCCAAATCTACAGTTGATTCTATATCACTCAAAAGGTTTCTGAAGATGTTGAATATTCTTT TCCAGGGAATTTCTTTGTGGTTAAATAAGGGCTCCACCATTCGTATGAGGTGGGAAGCACAAGCTAGTAGTATAAGTCAA CTTGAGGGGATAGTGATTAAAGGTTACTTCAGGAGAAAACCTCATGGTTCTATTATATATTTGTATTTTTTGTATGAACA AAATGTTCTCTTCCAGTTAGAATCTCAGATTTATCTCATGAAAGATCAACTCTTGTTTCACAGGGGACAGGAAATTTGAA GAATTACAGCCAGAACTAAAGCTCTTACTTGATGCAATTGATTATAGTGAGACTATTAATGGTAATTGATTTCAAATTGC TACTGCTATAAAAAGTGTTTAGACTCTGCAGTAGCAATGAGTTTGCAACTTTTCATTCTACTTATTACTAGAGGCAGGGT AATATGCTAAATAGTGGTACAAATGTTTTGATGTTTACTATAATTGGTGCTGTCAGGTAAAGAAGCTGAATACATCATTG AGGAAGATGATAGGTACCACATAGGGATTCTAAACATGAATGCCAGGAGCATAATATTGACCATGAACATTAATGTTTCA GCAAAGGTTTATGATACTACCAAAGCCAAGAATATGTGCTCTACTGTGAATGGATCATGCAGACTTAGACTCTTCTTCCC TATCACAAATTATGTAATTCTCACAGCACCCGAAAATGTAAGGCTAACTAATTTTCTATCTTCATGTTTGTATTCACTTC TAATCCTATCAGAGTCAATTTTCCCCACGAAAGTTACCCTTAGAAACTTCTGTCAGAACCACTTATTCTCAAATAGTGGA AACCTACCGAGTTTCCAAGCATTCACAATCTTCTTTCTAGAACTGTTCTTATAATCTTATAGGGAACTAGGGAAGTAAGG GTGTTTGGTTCATGTTTGGCAGCCTTAGAATCAATTCTCATTAACCAATTTGTGCTTTTATATATGTTTAGCAATTGACT CAGTGCATGTTTGGATATAAGTGGAAAACCACGGTGAAGCTAAAATCACAGTGGCCAGCCACAAAATCTAAAGGAAGTTG CTTCTGTCCACCGTGATTTTTCACCGTGTATCCAAATATGCACTTAGAGAATTGGTTTTAGTCTCAAAACCAATTCGCCG AAGAAGCTATAAAGAGCAGCTTCTGTGATGGACATATGCAATTGTGAGATTCCATAACTGAATTTCACAAAACATAATAG AAATATTTTTTCCTATAAACATAGACAAACATAAGTCATTGCATTTTCACCATAATTAATTTATCCAAAATCAATTATAA CAATGTTGATCCAAACAAGTACTTAATTCAATCTTGTTTATATGAATTGACTTCAGGGAGGTGATGGTGGATGGGTTATT GAAGTTTCTTTCATGGCTCGCATTATAGCCTATGTTGCTCTATTAGGTAATTTGAACTTAAATTTCTTTTTGGGAAGCAT TAGTTTGTAACTCTATTTGTGACTAAAAATTCTTCCTTTTTTTTTCAATTTGAAGGGTTATTTATGATTGTTATATTTCT GACACTGAAATGCCTTGGAGTCCTTGATGGTGGTCATCACAACACTAATGTGATAGTGGACCCTTATGGAACAACAAGCA ATGTACTTGCAGCACAAGAAACAACTGAAACTGAGCCCTTGACATGTGTGCAGACAAATACAGAGATTAAAATTCAAAAG GAAGAATCAGATACATCCAGTGTCTCTTCAGAGGAGTTATATGATGAAAAATTGTGTGTGATTTGTTATGATGAACAACG CAACTGCTTCTTTGTTCCTTGTGGCCATTGTGCCACTTGCTATGACTGTGCACAGAGGTAAATGTTGCTTTTTATGTTTT GAAATGGCTTTTACAAATGATCTAAAGCCAGAATCAACTGGGGAGAAATTTCTACCAGTAGGTTCTGAGTTTCAGAATTG GTTTGAGAAATACGGAGCAGATCCAAACACGCTATAAGTTAAAATTCTAAGAGATTCTCATTAGAGTGCATTTTGCAGGA TTGTGGATGGGGAGACCAAGGTTTGTCCCGTGTGCCGGAGGCTTATTCACAAAGTCCGAAGATTATTCTTAAGTTAGGCT TGCAAATATGTAGTGACATTGATGTAGGAAGATCACATATATTATGATGATTGATGAAGGAAATTTGAGATGAAACTAGA AATCGAAGTAGGTTTTTGGAAGGAAATGAGTGATATTGTGTTCTGTGTGACTGTATCTGTAATACAACATATTCCTATGG CTTTCTATTTTTTCCATCAGGCTGCAGGGGAATGAGTTACTATGATTTTGGCTGAGTGCATCTTAGCAGCAATGGCTGAC AATTTGTTATCACTTCCAGACCTGAAAGATAGGTCTTAAAAAGATTGTCATATTTCTTTGATAGTATAATTAGCACAATG TTTTAGTGTGTGTTCATTTTCCGATGTAACAAAAAAAAAATGTTTTTGTGTGTGTTTATTCTCTTTTTGAGTTTTCTCCT TTCTTTCTTTCAGACATCATCTCATTTCTGCATCAGGCACTAGAATATACTTCATCC
CDS sequence (LotjaGi5g1v0031800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGGACACTATGGTTGCATACTTCCACAACATATCACCACCCCTTGATGGATCCAACTCCAGCATATCATCGATG GCATGACGCTTGGGCGTGCATTCTTGCTACTCTCATCATTTATATTACCGTTTCAGCTAGTCTCATGTATGGCTACTATG GCGATTCTCGCTTGTTGCTTGGCCCCAGCTCATCGCGTTTGGTAAAGGCAAACTCTGTTTTGGTAGATAGAATTGAAGTA ACTAGTGAGTATAGTAATGATCTTTTGCTATATGGGTTCCATGAAAGGCCTGAGTTAAGCTCCCAAGCAAATTGGTCTAC CTCAAAGTTTCTAGATGTTTCAGCATATAGTCGCAAGGGAATTTCTTTGTGGTTAAATAAGGGCTCCACCATTCGTATGA GGTGGGAAGCACAAGCTAGTAGTATAAGTCAACTTGAGGGGATAGTGATTAAAGGGGACAGGAAATTTGAAGAATTACAG CCAGAACTAAAGCTCTTACTTGATGCAATTGATTATAGTGAGACTATTAATGGTAAAGAAGCTGAATACATCATTGAGGA AGATGATAGGTACCACATAGGGATTCTAAACATGAATGCCAGGAGCATAATATTGACCATGAACATTAATGTTTCAGCAA AGGTTTATGATACTACCAAAGCCAAGAATATGTGCTCTACTGTGAATGGATCATGCAGACTTAGACTCTTCTTCCCTATC ACAAATTATGTAATTCTCACAGCACCCGAAAATGGAGGTGATGGTGGATGGGTTATTGAAGTTTCTTTCATGGCTCGCAT TATAGCCTATGTTGCTCTATTAGGGTTATTTATGATTGTTATATTTCTGACACTGAAATGCCTTGGAGTCCTTGATGGTG GTCATCACAACACTAATGTGATAGTGGACCCTTATGGAACAACAAGCAATGTACTTGCAGCACAAGAAACAACTGAAACT GAGCCCTTGACATGTGTGCAGACAAATACAGAGATTAAAATTCAAAAGGAAGAATCAGATACATCCAGTGTCTCTTCAGA GGAGTTATATGATGAAAAATTGTGTGTGATTTGTTATGATGAACAACGCAACTGCTTCTTTGTTCCTTGTGGCCATTGTG CCACTTGCTATGACTGTGCACAGAGGATTGTGGATGGGGAGACCAAGGTTTGTCCCGTGTGCCGGAGGCTTATTCACAAA GTCCGAAGATTATTCTTAAGTTAG
Protein sequence (LotjaGi5g1v0031800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRTLWLHTSTTYHHPLMDPTPAYHRWHDAWACILATLIIYITVSASLMYGYYGDSRLLLGPSSSRLVKANSVLVDRIEV TSEYSNDLLLYGFHERPELSSQANWSTSKFLDVSAYSRKGISLWLNKGSTIRMRWEAQASSISQLEGIVIKGDRKFEELQ PELKLLLDAIDYSETINGKEAEYIIEEDDRYHIGILNMNARSIILTMNINVSAKVYDTTKAKNMCSTVNGSCRLRLFFPI TNYVILTAPENGGDGGWVIEVSFMARIIAYVALLGLFMIVIFLTLKCLGVLDGGHHNTNVIVDPYGTTSNVLAAQETTET EPLTCVQTNTEIKIQKEESDTSSVSSEELYDEKLCVICYDEQRNCFFVPCGHCATCYDCAQRIVDGETKVCPVCRRLIHK VRRLFLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 22 | 406 | 385 | 2.2E-168 | – | |
| PANTHER | 22 | 406 | 385 | 2.2E-168 | – | |
| Phobius | 29 | 53 | 25 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 54 | 266 | 213 | - | – | |
| Pfam | 89 | 156 | 68 | 6.1E-17 | ||
| Pfam | 181 | 283 | 103 | 2.0E-23 | ||
| Phobius | 267 | 285 | 19 | - | – | |
| TMHMM | 267 | 289 | 23 | - | – | |
| Phobius | 286 | 407 | 122 | - | – | |
| Gene3D | 327 | 407 | 81 | 7.1E-17 | ||
| SUPERFAMILY | 342 | 401 | 60 | 4.71E-8 | – | |
| Pfam | 352 | 401 | 50 | 7.9E-15 | – | |
| SMART | 355 | 394 | 40 | 0.0016 | ||
| ProSiteProfiles | 355 | 395 | 41 | 11.132 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0031800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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