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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR037027
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We have found 20 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.565s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0231300.1
n.a. Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300 LjG1.1_chr1 54186131 54189764 -
2 domain predictions
1 GO term
LotjaGi1g1v0231300.2
n.a. Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300 LjG1.1_chr1 54186131 54189764 -
2 domain predictions
1 GO term
LotjaGi1g1v0657000.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698183 121709835 -
2 domain predictions
1 GO term
LotjaGi1g1v0657000.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698902 121708758 -
2 domain predictions
1 GO term
LotjaGi2g1v0279500.1
n.a. Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 LjG1.1_chr2 75095832 75099019 +
2 domain predictions
1 GO term
LotjaGi2g1v0279500.2
n.a. Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 LjG1.1_chr2 75095832 75099019 +
2 domain predictions
1 GO term
LotjaGi2g1v0279500.3
n.a. Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 LjG1.1_chr2 75095925 75098985 +
2 domain predictions
1 GO term
LotjaGi3g1v0103300.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.10
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800783 12813408 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.11
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.12
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.3
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.4
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.5
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|Q9CAM1|SPT62_ARATH Transcription elongation factor SPT6-like; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.6
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.7
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.8
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.9
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0205400.1
n.a. Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi3g1v0205400 LjG1.1_chr3 30126648 30150639 +
2 domain predictions
1 GO term