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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0231300 |
| Transcript ID | LotjaGi1g1v0231300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54186131..54189764) extracted from Lotus japonicus Gifu genome v1.2.
GTGACCATTATCATTGTCCTCTCTCTCTCTCTCCAATGTGGACGCAGCAACTGCTACAGGCACCACCACCCCAGAACCTC TTCCTCTGTTGTTCAGCTCCGAGTGTTCCAAAAAAACCATCTTTTGTGAAACTGTGTCCGACCCAGAATGCCAAAAGTCA CTACAACAGAGTAAAGCCAATCTCTTTGGATGAATTTCCCCCGAACGCCCTTCGCAGGAGAGGAGGCTTCACTCTTGGAG TCGACCTGGGTATGGCTCGCACTGGCATTGCCATCAGTAAAGGCTTCAACTTTCGCCCTGTAACGGTATAATTCACCCTT TGCTTCTATATTAGTTTTCTAATGATATCTTGTTCTCATGTTGTTTTGTATTCCAGTTTCTGTCAAATTTATTTTGGGTA CCAATTTATTGGAACTAGTACTTCCAATCCTGGACATGTTTTATTTCTACTTTTTAATTGTTTTTAATATTTGGGGTGTA AAGGGTCTAAAGAAAAATTGAACTCATGTGGGGTGCTTCATGTAATGTTTGTCCTTATATGTATGCTATTAGTAGCTAAT GTTGTTTAGGTGTAATGCAAGTCATTGGGATAGTTTGTGCCTGTTGTTTAGTATGGTGAAACTCAAAATTTTGTGCTTAA TAAGATGTGAGCTGTTCTGTTAAGTTTGGTGTGATAAAATTTATGTGGGGTATTACTGCAATTGGTAAGAAAACATTGCT GTTAACTGTGACACTGAATATTATGGATGTTGGTAACTGCAAGTGGAATTATGGACTATCTTATGTCTTATCTTATCTGT GTTTCTTCATCAGCTACTCATCCTTTTATTCCTGTAGCTGCTTTAGGTTTTGGAATTGCGAGGACAGAAGCTTGAGGTCC AGATGATAAACATTGCTGAACAAGAGGTGTGAATTTTCCTTTTGTCTCTTGTATTTCTTTCAAAAATTGGTTGATATTTG ATAAGGATCTGTTTTCTCTTTGGGCACGTAACCTTAGAGGTAACATGATTTTAAAACTGTAGGAGGCAGACGAGTTTGTA ATTGGACTTCCAAGATCTTTTGACGGGAAGGAAACACCACAGTCAAACATAGTCCGTACTGTTGCAGGGAGGCTTGCTAT TCGAGCTGCTGAGAGGTAATGCATTTGTACTAATCACAACTCACAAGCATATTCTTCTTCACTGTCAAATATACATTATA TATATATATATATATATATATATATATACATATATATTCATTTTACAGGCTACTAAATGACCGGCAGCCTCTTTATGACA TAGGAATACCTTCAATACCCATTGATTGACCTTATAAATCATATTGAGTTGCTTTATTCTTCTTTGGCTCTTAAACTTAT ATAACTAACAATTCTCCTTGCCACTAATAATTATTGACTTATTTACTGAATTAGGGAGAAAATAAAGTATAGATTCTAAT GTTCATGTAATCTAATTTGGGCTGAAAGGTTAAATATTGTGTCTTGGAGGGCTCCTGACACTGGTTTGTGAATTGATATA ATTATTTATATCACCGTTTTAATTTCTATATTATACCTTGACTTTCAGGGGTTGGAGGGTATATCTACAGGATGAACATG GGACAACAACAGAAGCCGTAAATCGAATGGTGAACATGTAACTGCTTTTAAACTTCTTTGCTGATTGTGTTTTACCCTAT GCAAAATTGCAATTCTCTCTTTTTCGTTTTATTTACTGATAAGAACCTTAGGAAAACCACACCACAAAAGCTAGCTGTTG TAGTTGAGGCCTTATAAACCCCACATTAGAATCTCATACTTCCAATGTGGGACTCAAGTCCCATACCTTGCAATTGGGTC CTAACATCCCACCATGCTCCGCAGCCCCAGCGCCCACGCGGGCTGGCTGTGCACTAGCCCCTTGACTAGTCCCGGGCGAA CATTGCAATGCCGGCGTCACCACCCGCGCCGCTCGTTTGCAGCTGAGAGACATGGTAGAAGGCTCTGATACCAATTGATA AGAACCTTAGGAGAACCACACCACAAAACCTAGCTGTTGTAGTTGGAGAGCCCAAGGCCTTATAAACCCCACATTAGAAT CCCATACTTCCAATGTGGGACTCAAGTCCCATACCTTGCAATTGGGTCCTAACATGCACCAATATATGGCAATCTCGGTG ATAATTTGATATCAGCTGCATCATCATTGAACTGAAAAAATTGTACAAAGGTTAGTGTTTGTAATCACTAACCTTTGTAA TCACTATTCAGTTAGTGTTTGTTTGGCACATTTCTCATTTACTACATGAAGGGAAGTAGATGGTCAAAGAACCCACGTAA CCTCCTAATTTGTTCTTTAGTGTAGAATAGTAAAACAAATTCATGAAAATTGAAACCTGCACAGTCCATACAGATGACTT CCTTTTGAAGAAATATGCATGTTATCTCTTAAAACTAAACATTTTGCAAATTCTGTTCATGTAGTTTTCTGTTCATGTAG TTTGAGGCCATTTTGGATGTAAAATTGTTTTCCTCTGGAGAAAGATGCATTACCCCTCACTAGTTATCAGTTATGGTTCT TATTCCAGCAAAGTTATTATGTGCTTATCTTCTGAACTTTATTTTTGTGTTGTAAATCGGAGACCTGTATTGGGATCTAA TGGGAATGGGACAATGACATGCAGGGGGTTCAGATCCCCTACAACCAGCGGCTTCCTGATCTTTAAGACTAGGGGAGGTA CCATGTGAGCTAAGGGTCACTGGTATCCGAGGAAGTGCTTCATTTACTGTGTTTATCTACTAAAAAATGTAAAAATCCAA TGAAGATTCTTTTTTTTTTAATACTTAGAGGTTCTTTTTAAAAGATGTCAAGCAAAGGTTTGTTTGGAATTTTAATTATT TTTTTGGGGAATTGACACACTTATAACTCTTTCAGGGGCTTAAGTAAGTCCTCTCAGCAGAGGAAACTTGATGCCTATGC TGCCATGGTAAGTGAATATGATGTTTTGTACCTTTATGTTAGTACACTTCAGTTTTATAAAGTTTTATAAGGATTTAGGA TATCATTATGCTCTCACTATTTCAAAGTGCCAACCAGAAGTGAAGGCCATTTTGGAATTCAGAGTCTCCTTTTTCTTAAC AGATGGTACTGGAGAGATATTTCTCCACGTCGGGTAAGGATGCTGAATTTGTTTTGCCAAAGAATCTAGAACTGCAAGGA AAACTCAGAAAGGGTCCTCCTGAAGACGACGATTTTTTCTCAGATGAAGATTAATCACCAGAATGAATGCTTTGTGCCAT TAACTTCTGCGGCAAATTTTATGGTGGTGCCTGGTACTAAAGGTTGATAACATGGGGTGAAGCTTACTAATTACAAGTAT GCATGGGAAAGTTATGAGAAAAGAGAAAGTTGATGTCTTTTAAATAAGTGAGGGTTTTTTAAATCACTTGTTTTCAAGCC TCAACTTAATATACTACAGTGACTTTAAAGACGGCAGATTAGTTGTAAATGTTAATGTCATTATGTTAACCTTTAACATG AAGAATGCATGTCAAATCTTTAAGTCTCTTGATGTTGATGCTTGTGGGTTTACTATGATCACCTTGATAAAATTTACCTT TCCATGAAATCGAACAGTTTTTCCCCTCCTAAGC
CDS sequence (LotjaGi1g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGACGCAGCAACTGCTACAGGCACCACCACCCCAGAACCTCTTCCTCTGTTGTTCAGCTCCGAGTGTTCCAAAAAA ACCATCTTTTGTGAAACTGTGTCCGACCCAGAATGCCAAAAGTCACTACAACAGAGTAAAGCCAATCTCTTTGGATGAAT TTCCCCCGAACGCCCTTCGCAGGAGAGGAGGCTTCACTCTTGGAGTCGACCTGGGTATGGCTCGCACTGGCATTGCCATC AGTAAAGGCTTCAACTTTCGCCCTGTAACGGTTTTGGAATTGCGAGGACAGAAGCTTGAGGTCCAGATGATAAACATTGC TGAACAAGAGGAGGCAGACGAGTTTGTAATTGGACTTCCAAGATCTTTTGACGGGAAGGAAACACCACAGTCAAACATAG TCCGTACTGTTGCAGGGAGGCTTGCTATTCGAGCTGCTGAGAGGGGTTGGAGGGTATATCTACAGGATGAACATGGGACA ACAACAGAAGCCGTAAATCGAATGGTGAACATGGGCTTAAGTAAGTCCTCTCAGCAGAGGAAACTTGATGCCTATGCTGC CATGATGGTACTGGAGAGATATTTCTCCACGTCGGGTAAGGATGCTGAATTTGTTTTGCCAAAGAATCTAGAACTGCAAG GAAAACTCAGAAAGGGTCCTCCTGAAGACGACGATTTTTTCTCAGATGAAGATTAA
Protein sequence (LotjaGi1g1v0231300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWTQQLLQAPPPQNLFLCCSAPSVPKKPSFVKLCPTQNAKSHYNRVKPISLDEFPPNALRRRGGFTLGVDLGMARTGIAI SKGFNFRPVTVLELRGQKLEVQMINIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVAGRLAIRAAERGWRVYLQDEHGT TTEAVNRMVNMGLSKSSQQRKLDAYAAMMVLERYFSTSGKDAEFVLPKNLELQGKLRKGPPEDDDFFSDED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 220 | 180 | 3.0E-72 | – | |
| PANTHER | 41 | 220 | 180 | 3.0E-72 | ||
| Gene3D | 63 | 198 | 136 | 6.8E-28 | ||
| SMART | 64 | 164 | 101 | 5.3E-13 | ||
| Hamap | 64 | 199 | 136 | 15.915 | ||
| SUPERFAMILY | 65 | 197 | 133 | 1.67E-24 | ||
| Pfam | 66 | 196 | 131 | 1.7E-25 | ||
| TIGRFAM | 67 | 195 | 129 | 1.3E-16 | ||
| CDD | 67 | 195 | 129 | 1.26076E-34 | – | |
| MobiDBLite | 211 | 231 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nucleobase-containing compound metabolic process | Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
Expression pattern of LotjaGi1g1v0231300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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