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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR038635
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.392s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0640200.1
n.a. CCR4-NOT transcription complex subunit 3; TAIR: AT5G18230.1 transcription regulator NOT2/NOT3/NOT5 family protein; Swiss-Prot: sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3; TrEMBL-Plants: tr|I1ML37|I1ML37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0640200 LjG1.1_chr1 119717092 119728432 +
2 domain predictions
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LotjaGi1g1v0640200.2
n.a. CCR4-NOT transcription complex subunit 3; TAIR: AT5G18230.1 transcription regulator NOT2/NOT3/NOT5 family protein; Swiss-Prot: sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3; TrEMBL-Plants: tr|I1ML37|I1ML37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0640200 LjG1.1_chr1 119717283 119728112 +
2 domain predictions
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LotjaGi2g1v0366900.1
n.a. CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|K7LPS4|K7LPS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366900 LjG1.1_chr2 86415186 86433009 +
2 domain predictions
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LotjaGi2g1v0366900.2
n.a. CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|I1LK90|I1LK90_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0366900 LjG1.1_chr2 86415364 86424265 +
2 domain predictions
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LotjaGi3g1v0278400.1
n.a. CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|A0A0B2RMT6|A0A0B2RMT6_GLYSO Putative NOT transcription complex subunit VIP2; Found in the gene: LotjaGi3g1v0278400 LjG1.1_chr3 55223685 55238946 +
2 domain predictions
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LotjaGi3g1v0278400.2
n.a. CCR4-NOT transcription complex subunit 2; TAIR: AT1G07705.2 NOT2 / NOT3 / NOT5 family; Swiss-Prot: sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2; TrEMBL-Plants: tr|A0A0B2RMT6|A0A0B2RMT6_GLYSO Putative NOT transcription complex subunit VIP2; Found in the gene: LotjaGi3g1v0278400 LjG1.1_chr3 55225611 55233146 +
2 domain predictions
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