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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR038664
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.837s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0642700_LC.1
n.a. H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC LjG1.1_chr1 120000122 120008283 +
2 domain predictions
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LotjaGi1g1v0642700_LC.2
n.a. H/ACA ribonucleoprotein complex subunit 1-like protein 1; TAIR: AT3G03920.1 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; Swiss-Prot: sp|Q8VZT0|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; TrEMBL-Plants: tr|A0A072U1E4|A0A072U1E4_MEDTR Gar1/Naf1 RNA-binding region protein; Found in the gene: LotjaGi1g1v0642700_LC LjG1.1_chr1 120000388 120002075 +
2 domain predictions
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LotjaGi3g1v0441300.1
n.a. H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|A0A1J7HBW8|A0A1J7HBW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0441300 LjG1.1_chr3 85406414 85410122 -
2 domain predictions
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LotjaGi3g1v0458700.1
n.a. H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|K7LU49|K7LU49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458700 LjG1.1_chr3 87333020 87336302 +
2 domain predictions
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