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LotjaGi3g1v0458700.1

Overview

Field Value
Gene ID LotjaGi3g1v0458700
Transcript ID LotjaGi3g1v0458700.1
Lotus japonicus genome version Gifu v1.2
Description H/ACA ribonucleoprotein complex non-core subunit NAF1; TAIR: AT1G03530.1 nuclear assembly factor 1; Swiss-Prot: sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1; TrEMBL-Plants: tr|K7LU49|K7LU49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:87333020..87336302) extracted from Lotus japonicus Gifu genome v1.2.

AAACGGCGTCGTAGCATTCGTATTGTTGTATCATTACTTTCCAAAACCCCTTTCATCTAGGGTTTAAGCTTCTGCTAAAC ACCAGACAGCACCAACCCTCACTCTGAAACTTTTGGTTTCGCATTCGATACAGCCCCCATTAATTTCACCTTCGAAACAA TGGAAACCCTAAACAACAACGGGTCGGAGCTTGACCCGAATCTTATTCCGACGGAGACACCACCACCGGAGGTTGAAAAG CTTGAAACTCTGGGCTGTGCGACCATCCCCATTGAGGAACCCAATAACGGGTCGGAGCCTGAAAAGCTTGAGAGTTTGGG TTGTGCGGCCACTCCCATAGTGGAAGGAGTGGAGAAAATCAGTTTAACAGGTACCCCTCTTTCAAAATCAGTTGAGGGGA ATGGTGATGAGGTTCATAGTGAATCTGAGAGTGAAAGTGAGAATTCAGAGTCTGAGGAGAGTTCTTCTTCTGACAGTGAG AGCAGTAGTAGTGATGATGAAAGCAGCAGTAGTAGTAGTGGCAGCGATAGTGATGATGATGAGGAGGAGAAGAAGGAGAA ACGCGGTGTTACTGGTGATTTGGAAGTTGAGGAAGGTGAGATAAGTGGTTCTGATGACGACAAGATGATTAGTTGGAGCA ACAATGATGATGATATTATTGGTGATGAGGATGATGATGCTGTTGAAGCACCCATCAGATCAAAGAATGAGATTCAGGTA TTCCCTTTTTTTAAATTCATAAAATAAATATTTGCTAATTTAATTTTGCAGTTAGTTTGTAGCTGATAGGAGCTTTTCAA CTGAGATTAGTATAAGTGCTTATAAGTTCAAAGATACTTGTAGAGAAGTTTTTTTTTAATAAGTTGAGGTGTAGAAATTG ATTTTAAGCTTATGGGGAAGCTATTACATGGATGGCTCATAATTATTGCAAGATTAGTTCAACCTTTTCTTTCCCCTTTT AAGTGTTTAGTGAACAAGTTTTTTCAAACTGGCTCAGTACTTCATTGGGAATTATCAGTTAGAGCTTGTTGAATGTAGAC TCTGTTTTGCTTTTTCTTACACACATGAATCTGCTGGGTTTGGATCCTTTCTTTTCAGTCCCAAGATGTTTATTTGAGTT TGGTTTAATCTGAAGAGATTATTTTATGCCAGTTACTATTATCACAGGAATTAAAAGTCTAGGCTATTGACCTTTTATTT TGAAGCATAAACAAGATTTTAGAATTAAAGAATTTGATAAACTTTGATAATCTCTTCACGCTTGGTGCAATACACAGACT CAGGGTGAAGTTTATCCAGTAATGTCTGTAGCTAATTTGACTACCCAGTACACCTGGTTACAAGCTATTGTGTAATTTTA TTTTTCTCCTGGGATTTCTTTTGAATGGTGTTAACTTTGCAGAATTTGCCTCCAGTTCCGCCTGTAAACGCGAGCTTAGA ACCACACCATCAAATTCTGCCAGTGGGAGTTGTAATGTCGGTAAGCTCATTGAAACCTAGTCTCTAATAATTGGAGAAAT GTTAGCATTGGATTATTAATTGCATGGTGACCCCTTATCTGTGTTAAATTAAGTGTTTGTTGCTATAGGTCATAGTGACG AAAGGAAATAGATACTGATTTTTTTAGAATCAACTAAATCAACTTCCTACTTTTATAGACTCTTGGTGCTCAAGTCATTG TGGAAGGAGTGGAAAAGCATGACCCACTTAATGAGGGTTCTATTCTCTGGTTAACTGAAAGCCAAAAACCACTAGGCATA GTTGATGAAGTCTTTGGACCAGTCAAAAACCCTTATTATGTTGTGAGATTCAATTCTGAAGATGAAGTCCCTGCAAGCAT CCAAGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCCGATCATGTGCTTAAAAACAAAGATGTTTACAAGAAAGGGT ATGATGCATCTGGTGCGAACGATGAGGAGTTGGATGATGAATTTGAGTTTTCAGATGATGAGAAGGAGGCTGAATACAGG AGAATGCAAAGATTGTCAAAGAGAGGTGTAAATGATCAAAATCCTGGCAAGGGCAAGAAAAAAAACAATAGATATCAGTC TTCACTGAATGAGTATGTGGTACCTTCCACCTCCGATGCACCTGCAACACCATTGCTTGATCGTGGGAATCATTCATCAT TTTCTGGCACTGGACAAGGTCCTTTGGGGGGAACCACCACAGTTCCACCATTTCCACCCTTAAATGCAGGTCCTAACTTT GCCGCAAATGGAGTTTGGACAAATGGGACATCATTTCCGCAGCAGCCACAACATGTTATGGCTCCTAATGGATTTCCTTC AAATGGCATACCATTTTACCCTCAAAACACTCAATTTTCTCATCAGTTGCCTATGCCAGGAATGCAATTTCAACAGCAAT TGCTTCCCAATCCTGGATCTCTTCTCACAAATATGCTTTCTGGGATGCAGCCCAATATATTTGCACAAGCCATGTCAGCA CAGGGGCTTCCGGGTCAAAACCAAATGCCTCAAAACCATCTGGGTCAAAACCAAATGCCTCAAAACTATCTGGGTCAGAA CCAAATGCCTCAAAATCAAATGGCATTTGGTTTGAGCTCACCCTTCTCACAGATTCCACCACCCTACTTTCCTGCACAGC AGGGTTTTCCATCTACTGAATCGCAACCAGAAAGAAACCCTAATTGGAATTCTAATTCTGCTTCTGGCTCCCCCTCTCAA TTTCATCCAGGCTCATCTGCTAGTCGTGGGAGAAACACTTATCGTGGTCGCGGTAGGAAAGGGTGGCGACCAGCCAAGTG AAGGTTATTGTGCAATTCACTTTGAAACAATCTGTCAGAGTAGGGCCATTCTGCAAGGATTGCACTTAGCTTTTGCGCTT GGGATCCTGAGCCAGCAACATTCTTGTTTTAAAAGACGTATAGGCATCTCTGTTGAAATTTGAAATTAATGCAGTAAGAT CCTAAAATAGATGAGTTCCTATTTACGTGTATTATCTGTTCTTTGGAAGTATTTTTTCTTGATTAGCTTGGTGCTGATGA TCTTGTTTGTTTACTGGATTGACTGAAGTTGCACCTTGAAACACCTTCCACTTCTAATGCGCTGAATCATGCTAATATAT TTTATCACCGTACTCAAGAATGATAACTGAAAAGTACTACTTATTTGAAGCACCAGTAAAAATCTCGTATTAAGCTTGAA ACAGATATCACCTCATTACTATTTTCCTTTCTGCAATCAATGCCATTTGCACTCTTTCATGCCTCTACCCAGGCCATTGA AAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0458700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAACCCTAAACAACAACGGGTCGGAGCTTGACCCGAATCTTATTCCGACGGAGACACCACCACCGGAGGTTGAAAA GCTTGAAACTCTGGGCTGTGCGACCATCCCCATTGAGGAACCCAATAACGGGTCGGAGCCTGAAAAGCTTGAGAGTTTGG GTTGTGCGGCCACTCCCATAGTGGAAGGAGTGGAGAAAATCAGTTTAACAGGTACCCCTCTTTCAAAATCAGTTGAGGGG AATGGTGATGAGGTTCATAGTGAATCTGAGAGTGAAAGTGAGAATTCAGAGTCTGAGGAGAGTTCTTCTTCTGACAGTGA GAGCAGTAGTAGTGATGATGAAAGCAGCAGTAGTAGTAGTGGCAGCGATAGTGATGATGATGAGGAGGAGAAGAAGGAGA AACGCGGTGTTACTGGTGATTTGGAAGTTGAGGAAGGTGAGATAAGTGGTTCTGATGACGACAAGATGATTAGTTGGAGC AACAATGATGATGATATTATTGGTGATGAGGATGATGATGCTGTTGAAGCACCCATCAGATCAAAGAATGAGATTCAGAA TTTGCCTCCAGTTCCGCCTGTAAACGCGAGCTTAGAACCACACCATCAAATTCTGCCAGTGGGAGTTGTAATGTCGACTC TTGGTGCTCAAGTCATTGTGGAAGGAGTGGAAAAGCATGACCCACTTAATGAGGGTTCTATTCTCTGGTTAACTGAAAGC CAAAAACCACTAGGCATAGTTGATGAAGTCTTTGGACCAGTCAAAAACCCTTATTATGTTGTGAGATTCAATTCTGAAGA TGAAGTCCCTGCAAGCATCCAAGGGGGAACCTTGATCTCGTTTGTTCCAGAATTTGCCGATCATGTGCTTAAAAACAAAG ATGTTTACAAGAAAGGGTATGATGCATCTGGTGCGAACGATGAGGAGTTGGATGATGAATTTGAGTTTTCAGATGATGAG AAGGAGGCTGAATACAGGAGAATGCAAAGATTGTCAAAGAGAGGTGTAAATGATCAAAATCCTGGCAAGGGCAAGAAAAA AAACAATAGATATCAGTCTTCACTGAATGAGTATGTGGTACCTTCCACCTCCGATGCACCTGCAACACCATTGCTTGATC GTGGGAATCATTCATCATTTTCTGGCACTGGACAAGGTCCTTTGGGGGGAACCACCACAGTTCCACCATTTCCACCCTTA AATGCAGGTCCTAACTTTGCCGCAAATGGAGTTTGGACAAATGGGACATCATTTCCGCAGCAGCCACAACATGTTATGGC TCCTAATGGATTTCCTTCAAATGGCATACCATTTTACCCTCAAAACACTCAATTTTCTCATCAGTTGCCTATGCCAGGAA TGCAATTTCAACAGCAATTGCTTCCCAATCCTGGATCTCTTCTCACAAATATGCTTTCTGGGATGCAGCCCAATATATTT GCACAAGCCATGTCAGCACAGGGGCTTCCGGGTCAAAACCAAATGCCTCAAAACCATCTGGGTCAAAACCAAATGCCTCA AAACTATCTGGGTCAGAACCAAATGCCTCAAAATCAAATGGCATTTGGTTTGAGCTCACCCTTCTCACAGATTCCACCAC CCTACTTTCCTGCACAGCAGGGTTTTCCATCTACTGAATCGCAACCAGAAAGAAACCCTAATTGGAATTCTAATTCTGCT TCTGGCTCCCCCTCTCAATTTCATCCAGGCTCATCTGCTAGTCGTGGGAGAAACACTTATCGTGGTCGCGGTAGGAAAGG GTGGCGACCAGCCAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0458700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

METLNNNGSELDPNLIPTETPPPEVEKLETLGCATIPIEEPNNGSEPEKLESLGCAATPIVEGVEKISLTGTPLSKSVEG NGDEVHSESESESENSESEESSSSDSESSSSDDESSSSSSGSDSDDDEEEKKEKRGVTGDLEVEEGEISGSDDDKMISWS NNDDDIIGDEDDDAVEAPIRSKNEIQNLPPVPPVNASLEPHHQILPVGVVMSTLGAQVIVEGVEKHDPLNEGSILWLTES QKPLGIVDEVFGPVKNPYYVVRFNSEDEVPASIQGGTLISFVPEFADHVLKNKDVYKKGYDASGANDEELDDEFEFSDDE KEAEYRRMQRLSKRGVNDQNPGKGKKKNNRYQSSLNEYVVPSTSDAPATPLLDRGNHSSFSGTGQGPLGGTTTVPPFPPL NAGPNFAANGVWTNGTSFPQQPQHVMAPNGFPSNGIPFYPQNTQFSHQLPMPGMQFQQQLLPNPGSLLTNMLSGMQPNIF AQAMSAQGLPGQNQMPQNHLGQNQMPQNYLGQNQMPQNQMAFGLSSPFSQIPPPYFPAQQGFPSTESQPERNPNWNSNSA SGSPSQFHPGSSASRGRNTYRGRGRKGWRPAK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 25 25 - –
PANTHER
PTHR31633
42 465 424 4.0E-127
IPR040309
MobiDBLite
mobidb-lite
66 168 103 - –
MobiDBLite
mobidb-lite
102 118 17 - –
MobiDBLite
mobidb-lite
125 142 18 - –
Gene3D
G3DSA:2.40.10.230
176 279 104 5.2E-28
IPR038664
Pfam
PF04410
187 330 144 9.5E-37
IPR007504
SUPERFAMILY
SSF50447
206 267 62 1.09E-10
IPR009000
MobiDBLite
mobidb-lite
330 345 16 - –
MobiDBLite
mobidb-lite
330 400 71 - –
MobiDBLite
mobidb-lite
346 363 18 - –
MobiDBLite
mobidb-lite
374 390 17 - –
MobiDBLite
mobidb-lite
492 511 20 - –
MobiDBLite
mobidb-lite
523 592 70 - –
MobiDBLite
mobidb-lite
540 578 39 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000493
Biological process Box H/ACA snoRNP assembly The aggregation, arrangement and bonding together of proteins and a box H/ACA snoRNA to form a box H/ACA small nucleolar ribonucleoprotein (snoRNP) complex.
Subterm of
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005732
Cellular component Small nucleolar ribonucleoprotein complex A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
Subterm of
GO:0042254
Biological process Ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0458700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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