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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF00333
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.026s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4694270.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr1 55813384 55814557 +
2 domain predictions
4 GO terms
Lj2g3v0156840.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr2 2819462 2821529 +
2 domain predictions
4 GO terms
Lj3g3v0139450.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr3 1048060 1052549 -
2 domain predictions
4 GO terms
Lj4g3v0462590.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6894978 6898177 -
2 domain predictions
4 GO terms
Lj4g3v0462600.1
n.a. PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1| chr4 6895339 6898171 -
2 domain predictions
4 GO terms
Lj4g3v3113160.1
n.a. 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1| chr4 41598383 41600418 +
2 domain predictions
4 GO terms
Lj6g3v1918200.1
n.a. 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1| chr6 21702343 21706161 +
2 domain predictions
4 GO terms
LotjaGi1g1v0681100_LC.1
n.a. 30S ribosomal protein S5; TAIR: AT1G58380.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1; TrEMBL-Plants: tr|I1K5K3|I1K5K3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0681100_LC LjG1.1_chr1 124833055 124834391 -
2 domain predictions
4 GO terms
LotjaGi1g1v0681100_LC.2
n.a. 30S ribosomal protein S5; TAIR: AT1G58380.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1; TrEMBL-Plants: tr|I1K5K3|I1K5K3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0681100_LC LjG1.1_chr1 124833381 124834147 -
2 domain predictions
4 GO terms
LotjaGi1g1v0681100_LC.3
n.a. 30S ribosomal protein S5; TAIR: AT1G58380.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1; TrEMBL-Plants: tr|I1K5K3|I1K5K3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0681100_LC LjG1.1_chr1 124833381 124834166 -
2 domain predictions
4 GO terms
LotjaGi2g1v0072200.1
n.a. 30S ribosomal protein S5; TAIR: AT3G57490.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072200 LjG1.1_chr2 18105089 18107390 +
2 domain predictions
4 GO terms
LotjaGi3g1v0014800.1
n.a. 30S ribosomal protein S5; TAIR: AT1G64880.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|B4RT45|RS5_ALTMD 30S ribosomal protein S5; TrEMBL-Plants: tr|G7LE23|G7LE23_MEDTR 30S ribosomal protein S5; Found in the gene: LotjaGi3g1v0014800 LjG1.1_chr3 1567669 1572223 -
2 domain predictions
4 GO terms
LotjaGi4g1v0057800.1
n.a. 30S ribosomal protein S5; TAIR: AT2G33800.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic; TrEMBL-Plants: tr|I1KLL8|I1KLL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0057800 LjG1.1_chr4 6919447 6923558 -
2 domain predictions
4 GO terms
LotjaGi4g1v0457300.1
n.a. 30S ribosomal protein S5; TAIR: AT3G57490.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457300 LjG1.1_chr4 82868486 82870358 +
2 domain predictions
4 GO terms
LotjaGi6g1v0305300.1
n.a. 30S ribosomal protein S5; TAIR: AT1G64880.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|B4RT45|RS5_ALTMD 30S ribosomal protein S5; TrEMBL-Plants: tr|A0A1J7GE15|A0A1J7GE15_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0305300 LjG1.1_chr6 62260576 62264888 +
2 domain predictions
4 GO terms