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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0072200 |
| Transcript ID | LotjaGi2g1v0072200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S5; TAIR: AT3G57490.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:18105089..18107390) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCAAATAAGCTTATATACTATTCTAACAATCCAAAGAAAACCCCTATGTCATTATCATATCACGTAAACCCTATAAA ACACGAATCTCATCCAATCTGCGCCACCTCCTCACTCTCTCTGCATTTTAGGGTTTCCTTTCTCTCAGCGCCGCACTCTC TATTCACAGCATCAATGGCGGAACGCGGTGGAGGCGAACGCGGCGGAGGCGATCGCGGTGGCTTCGGACGAGGCTTCGGT GGCCGAGGACGCGGCGGTGACAGGGGCCGCGGAGGCCGTAGAAGAGGCGCAGGCCGCCGCGATGAGGAGGAGAAGTGGGT TCCAGTGACGAAACTCGGTCGTCTAGTGAGGGATGGGAAAATCCGCAGCTTGGAGCAGATCTACCTTCACTCTCTCCCCA TCAAGGAGCACCAGATCATCGACACCCTCGTGGGACCCACGCTCAAGGACGAGGTGATGAAGATCATGCCGGTCCAGAAG CAAACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCTTTCGTCGTCGTCGGAGACAACAACGGCCACGTCGGTCTCGGCGT GAAGTGCAGCAAGGAAGTCGCCACCGCCATCCGCGGCGGCATCATACTGGCGAAGCTTTCCGTGATCCCCGTCAGGAGGG GGTACTGGGGGAACAAGATTGGGAAGCCTCACACTGTTCCGTGCAAGGTGACAGGGAAGTGCGGTTCTGTCACCGTCAGA ATGGTTCCGGCACCTCGTGGTTCTGGAATTGTGGCTGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGGATTGATGA TGTCTTCACTTCTTCCCGAGGATCCACCAAGACACTCGGCAATTTCGTTAAGGTTTGTGCCTTAATCTCTATTAATCATT TTCATGGTACTGTTGTTATTTATTTTGAGTAATTATTCTAGTAGAAGTGTTAGTTTTTCTTATTTTTAGATTAACTGTTC CGCATTTTTTGTGTAATTCCAATTTGCAAATTTTGTGCCATTCTTATGTAAGGCTCCTTATGTTTGATGTTTTTTACTTT ATTTTAGAGTTTTCGACTGCCATTTGTGCTATATAAACATTTAAATGCCTTATTGATGTATAATTGAACTATGGAATAAT GTATAACTTGGTAAAGCTATGTATTTTGCTTTCATTGTTTTTAGAGTTATATGTTTTTCTAATTTATATTTCATATACCA TTGACAATATGTTTTGTTATTCTTGTGGAAGTGTTGATACTGGGCTCTGTTTTCAATTATATATATAACTCGAAAGAGGT TCCTTTCGTGGTTTGTTGCTTTTAGCATTTGTTTTTCAAGTTTTCTTATTGTATGAAGAGGCAAATGTTATTGAGTGATC TTTTAGCAAATTAAGGTTCAAATAATTGGGGAGTGAAGTTAATTGAGGTGGAGTTGTTCTCAATGGTCTCCAGTTAAGCT CTTTTTGTTTCAATGAATTAAAAGGTATACTTTTCCTGTTATTTGCCTTTTGGTTACAGGAGACTTGTAAGAATGTCTGC ATATAATAAAAACCCTTGTGTTTTATTTAAATCTGTTCAAATAATTGGGCTGTGAAGTGATAGTGATATTTAATTCTACC TTCACCTGTGGTTGTAATTGATTGATATTTTGTTTCTTCTATTCTATGTTTGTTGGGTAAGTTGAACGGGGCTTGAGCAA ATGTACGAGTCATGGGCCAAATTTGATGTGTAGTTTGTAGTGTTTTGACTGTTTTTGCTGCAAATGAAAATGTATCATGG TTCCATTGGGTGATATTTCTTGCTTTTGCTTTTGCTGATGACGTTTATTTTTACAGGCAACTTTTGACTGTTTGCTGAAA ACCTATGGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCACCAAATCTCCATTCCAAGAGTACACAGATCTGTT GGCTAAGCCAACTGCAAAGGCTCTAATCTTGGAGGAGGAAAGGGTGGATGCTTGAGTTATCAGTTATGATTTTTGTGGGA TACAGTTTTTCTTAAGCAATGTTAGGAACTGATACTTTTAAATTTCTTTCCTTTGTGCTTTACTTCTCTTTGTGGGACGG ATCATCATTTTATGGTTCATTTGGTTGTTTTAACTTTTAGTTAATTGAATTGATATTTGTTGGGTTTCAAATGCCATTGT TTTAGCTTTCTTTTTATTTGACTGTCACAATTGAATGACATAATTCAGATACAGGGAGGAGCATGTGCTACTGTGTTTCC CTTCAGGCCTATTGAGGGGCAATTGGGTTTGGAGCCCCACCCCTTAGGCTTTGCACCCCCCC
CDS sequence (LotjaGi2g1v0072200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTATCATATCACGTAAACCCTATAAAACACGAATCTCATCCAATCTGCGCCACCTCCTCACTCTCTCTGCATTT TAGGGTTTCCTTTCTCTCAGCGCCGCACTCTCTATTCACAGCATCAATGGCGGAACGCGGTGGAGGCGAACGCGGCGGAG GCGATCGCGGTGGCTTCGGACGAGGCTTCGGTGGCCGAGGACGCGGCGGTGACAGGGGCCGCGGAGGCCGTAGAAGAGGC GCAGGCCGCCGCGATGAGGAGGAGAAGTGGGTTCCAGTGACGAAACTCGGTCGTCTAGTGAGGGATGGGAAAATCCGCAG CTTGGAGCAGATCTACCTTCACTCTCTCCCCATCAAGGAGCACCAGATCATCGACACCCTCGTGGGACCCACGCTCAAGG ACGAGGTGATGAAGATCATGCCGGTCCAGAAGCAAACCCGGGCCGGTCAGCGAACCCGGTTCAAGGCTTTCGTCGTCGTC GGAGACAACAACGGCCACGTCGGTCTCGGCGTGAAGTGCAGCAAGGAAGTCGCCACCGCCATCCGCGGCGGCATCATACT GGCGAAGCTTTCCGTGATCCCCGTCAGGAGGGGGTACTGGGGGAACAAGATTGGGAAGCCTCACACTGTTCCGTGCAAGG TGACAGGGAAGTGCGGTTCTGTCACCGTCAGAATGGTTCCGGCACCTCGTGGTTCTGGAATTGTGGCTGCTAGGGTTCCC AAGAAGGTGCTGCAGTTCGCTGGGATTGATGATGTCTTCACTTCTTCCCGAGGATCCACCAAGACACTCGGCAATTTCGT TAAGGCAACTTTTGACTGTTTGCTGAAAACCTATGGTTTCCTGACACCTGAATTCTGGAAGGAGACTCGCTTCACCAAAT CTCCATTCCAAGAGTACACAGATCTGTTGGCTAAGCCAACTGCAAAGGCTCTAATCTTGGAGGAGGAAAGGGTGGATGCT TGA
Protein sequence (LotjaGi2g1v0072200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLSYHVNPIKHESHPICATSSLSLHFRVSFLSAPHSLFTASMAERGGGERGGGDRGGFGRGFGGRGRGGDRGRGGRRRG AGRRDEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVV GDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVP KKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 44 | 88 | 45 | - | – | |
| PANTHER | 50 | 312 | 263 | 2.7E-161 | ||
| PANTHER | 50 | 312 | 263 | 2.7E-161 | – | |
| MobiDBLite | 67 | 88 | 22 | - | – | |
| TIGRFAM | 85 | 292 | 208 | 3.6E-93 | ||
| Gene3D | 89 | 194 | 106 | 6.0E-54 | – | |
| SUPERFAMILY | 128 | 197 | 70 | 2.09E-21 | – | |
| ProSiteProfiles | 132 | 195 | 64 | 22.821 | ||
| Pfam | 132 | 196 | 65 | 1.5E-29 | ||
| ProSitePatterns | 149 | 181 | 33 | - | ||
| Gene3D | 195 | 288 | 94 | 3.0E-51 | ||
| SUPERFAMILY | 208 | 288 | 81 | 2.33E-25 | ||
| Pfam | 215 | 281 | 67 | 1.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Small ribosomal subunit | The smaller of the two subunits of a ribosome. |
Expression pattern of LotjaGi2g1v0072200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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