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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0070100 |
| Transcript ID | LotjaGi1g1v0070100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb/SANT-like DNA-binding domain protein; TAIR: AT2G24960.2 Myb/SANT-like DNA-binding domain protein; Swiss-Prot: sp|O82368|Y2988_ARATH Uncharacterized protein At2g29880; TrEMBL-Plants: tr|I3SPT3|I3SPT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0070100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9941383..9945355) extracted from Lotus japonicus Gifu genome v1.2.
TCACGCGTTTCATTTGTCTTCTCTTCTGCAAGCCCTACTCTTCTCCTCCTTCGTTCTTCTACTTCCAGTGCTACCGGCCG CCGCTCTCGCCGCTGCCGCCGCACGCACCTGTTGCAGGTATGTCAACTCTTCTCCTCTTGCGTCCTCCTTCTTCTTCTAT TTATTTATCTTGGTTTTTCAGAAAGGGGAAAATGATTTCTTCCTCTCTTCTTTCATTTTCCCTAATTTATTGAACTGATA TGGTGGTCTAGGTTGCCATGTAAATGAATGAAATTCTAACCCTAAAATTTCAGTTGCTGTAATTTTCAATTGAGCTGTTA AAATTGTTAATTTCTATTTCTGGGTGTAGCTTAAAATTTAATCTTGTTATATATGAGTTCTTCTCCACCATTGATTTCAA ATGTATTTGTAGTTTGCTCCCTATCTTGCCTCGTTGCTGCTGGTATTTGCTGCCATGTATCTAACTTAAAATTATTTTAC TGCAATTTACATCAAAAGCTCTAAACACAAGCTCAAACTTAATATTAATAGTACACATGGTAATCACCAAACCACAAGCT TAAAATTTAAGCTTGTTATATTTATCCCCTTCTTTTTCTGGTTGCTGCATTGGCATTTAGTAGCCTAATTTATGTTTCAT GTTGAGAAGAACATGGTTGAAGGTTCATGGTTAATGTACCAGTTTTTTCTCCCTTGGGTCTGCTATTTGTGTTTTGAGTT TGTAGACCCCATTGGCTTTAAGGCTTCGTAGACTCTTTGTATATGGCATGCTATTCTTGGCAGTAGGATTTTGTTGAGTT TTGGGGTAGTCTAGGTGGCTCTTTCTTCTGTCTTTTGAGTTTTTTTATTCTCTCTTCCCCTTTCTTCCTTGTTTCTTTTG GGTTGAGGTACCCCTAGTACCTCCTTAAATGAACATTTTGTTTACTAACTTCCTTGCTATTTTTTCCCTATGGAACCATA AACTTCACATTAATAGTTTACTATGTTTATACTTGTCATAATTGTGTCTTGATAACAGGGGTAAATATGAATCAAAAGCA GCGTCGAATGTTAACATATTTAATTATGGAAACTACGTTCTATCAGATGGTGGGGGTTTGTTTTGCCATTGCAATGGCAG TTAGCTCTTCTGCACAATGGTTTTATGAAAATAGTTGTCTTAGGCAACTACCTATAAGTGGAGAAGGTTTAAGAGGAGAG TTATTACAGAGATTGATCAATCGAGATGATGTGACATGTATTGATCAACTTCGTGTGGATATTAGGTCTTTTAATTTGTT ATGTGCTCTCCTCCGTAATGAAGGTAAATTGAAAGGGGATGGATTGGTCACAATTGAGGAACAAGTGGCTATGTTTCTAC ACATATTGGCACATCATTCAAAGAATCGTGTCATAAAGTTTCTCTTTAAGCGGTCGGGAGAAACAATTAGTAGGTATTTT AATAAGGTGTTGAATAGCGTTGTACGAGTGCATGCATCACTCCTTAGAGCACCGGATCCTGTATTAGAAGATTATTTAGA TGAAAGATGGAAGTGGTTTAAGGTATGATGTTAGCCTATTGTGATCAAGAAATGACTTTAGTTGTGTATTATTCTTTTAA GATATTCATTTTGTATTTGGGTTTTTTCTATAGAACTGTCTTGGGGCACTAGATGGAACACACATTGAAGTTAATGTTCC AGCAATTGATAAACCAAGATATCGTAATAGAAAAGGGGATATATCTACCAACGTCCTAGGTGTATGTGCTAGAGATATGA GGTTTATATATGTGTTACCCGGATGGGAAGGATCTGCATCGGACTCAAGGATATTACGAGATGCAATTTCTAAGAGAAAT GGTTTAAAAGTTCCAACAAGTAAAAGCATTGCATATTGCAAAGTTTATATGATTATATAAATTAAAAATATTTTAAATTG ACACATTTTATTATAGGTTACTATTATCTCGTGGATGCTGGGTATGCAAACTCTGAAGGATTTCTTGCTCCATATAGAGG TTATCGTTACCACCGCAGTGAGTGGAAACGTGGATCCACACCACAATGTAAAGAAGAGCTCTTCAACATGAGGCACTCTA TGGCTAGAAACGTGATAGAGAGAACCTTTGGATTGTTAAAGATGCGATGGGCAATACTTAGAAGTCGGTCTTTTTATTCA CTCAAAGTCCAAAACAACATAATAATTGCTTGTTGCATCTTACACAATTTCATTAGAAGAGAAATGTCTATCGACCCATT GGAAGCACAACTAGATTTGGAACTTGAAGCACAATTACACAATGAGGATGTGGCACATAATGATCCTATTAGTACGATTG AGACAACTGAGGAGTGGTCTGTCTGGAGAGAAAATTTAGCTACACAGATGTGGAATGAATGGGTTGCTACTAGAAATATG AATTAGGACATGCATTTGTTTGTATTTTTTGTCATAAATTTTGGAATTTGAGTTACTTTGCTGGTTTATGGTGTACTCTT GTCTGTTATGTTTTTGGAAATTTGGTTATATATTTGGTTTGTGTACTTTGATAATGAACTATGACATCTGTTTGTTTGTA TTTATTGCACTACATTATGGAATTTGTGTCATTGTGTTTGCCTATGACATACTCATGCCTTATGTCTTAATTATTTTTTT AAAATATGTTGAATAAAAGTTTGAGTATCTCATAGGAATGGACTCTGAAAGCAGCATCCAGCAAAACAACAAGAGAAAGA GAGATCGTAGACAATGGTCTAATGATGAGGATGAAGCATTATTATACATATTGATTGAAGCTGTTAACCAAGGTCAAAAA TATGAAAATGGACAATTCAAATGAAATACTTTGAAAGCGGCTGATGCTAAATTAGAGAAGAAGTTTCCTGGATGTGGTAT TAAGGTGAAACCACATATTGAATCTGCAATGAAGAGGCTCAAAGGAGTTTATAATGATGTTTATGATATGCTAAATCAAA GTGGATTTGGTTGGGATGATGAGAAGAAGATGATTAATGTGGATAGTGAAGATGTGTGGAATGAGTATATAAAGGTTAGT GTTTATAATTTTTCCTCCCTAATGAATTCTTTTCTTTGACAATGTATTTGTGATAAATTAAATTCTTTTCATTTTGTGTT GTTTTAGAGTCATCCAAATGCAAAAGATTATAGGAATGCACGGATTCCACTCCTTGAAAAGCTTGCTTATGCCTTTGGAA AAGATCGTGCTACTGGAAAATTAGCTTATTCACCTGCAGATGTTGTTGAGGAATTGGATAAAGAAGAGGAAGAACAAGCT GATCCTGATGATGTTAGAGTGGAGATGACCCCGACATCATCTGTTAATAAATCACAATGCAGAAAAGATGACCTTGTGGA AAGTCAATCAAGGAAAAAAAAACAGAGGAGCAAATTTGATTGCTAATAGTATATCTGAATTAGAAAATACTCTTGGGAAA TGGCTTGAATTGAGTGCTGAAAGATTGGCTGAGGCTAGTAATAGCCTCAAAGTTGATAAAGACATGTTGATGATTCCAGG GGCGTCATGGATGAGCTGCTGAAAATGGGTTTAACGGATCAAGAGCGTTATGCAACTGGAGATAAGATAATGTCTATGCC TCATCGTGTGCACATGTTTTGGGCTTGTCATGGAGAGGACCGTCTCAAGTTTGTGAAGTCATTGATATAATTGCTTTGAG TAATTGCTTTAGAGAATGACATATTGTTTGACGATGTTTTTGCTATTTTGCTTTGTTTATGTTGGCTTCTCTACTACATT CGGATAGTTCACCATTTTGTTGGATGTTTATGTTATTTGGCTTTGTTATGCTATTTCTAGGGTGGAGATGACATTGCTCC TCTATTACATTCGGATAGTACACCATTTTGTTGGACGGTGTTTATGCTATGTTACTTTATTTTGATGGAGGATGTTTATG ATGTTTATGTTATTTATAAAAAGCACATGATTCAACTTATCCATTATATTTTC
CDS sequence (LotjaGi1g1v0070100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGCTCAAAGGAGTTTATAATGATGTTTATGATATGCTAAATCAAAGTGGATTTGGTTGGGATGATGAGAAGAA GATGATTAATGTGGATAGTGAAGATGTGTGGAATGAGTATATAAAGAGTCATCCAAATGCAAAAGATTATAGGAATGCAC GGATTCCACTCCTTGAAAAGCTTGCTTATGCCTTTGGAAAAGATCGTGCTACTGGAAAATTAGCTTATTCACCTGCAGAT GTTGTTGAGGAATTGGATAAAGAAGAGGAAGAACAAGCTGATCCTGATGATGTTAGAGTGGAGATGACCCCGACATCATC TGTTAATAAATCACAATGCAGAAAAGATGACCTTGTGGAAAGTCAATCAAGGAAAAAAAAACAGAGGAGCAAATTTGATT GCTAA
Protein sequence (LotjaGi1g1v0070100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLKGVYNDVYDMLNQSGFGWDDEKKMINVDSEDVWNEYIKSHPNAKDYRNARIPLLEKLAYAFGKDRATGKLAYSPAD VVEELDKEEEEQADPDDVRVEMTPTSSVNKSQCRKDDLVESQSRKKKQRSKFDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 40 | 40 | 5.0E-6 | ||
| PANTHER | 2 | 130 | 129 | 7.2E-32 | – | |
| PANTHER | 2 | 130 | 129 | 7.2E-32 | – | |
| MobiDBLite | 83 | 134 | 52 | - | – | |
| MobiDBLite | 113 | 134 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0070100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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