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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR10492
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 160 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.078s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0012399.1
n.a. Helicase-like protein [Medicago truncatula] gi|357515129|ref|XP_003627853.1| chr0 4682412 4682809 +
1 domain prediction
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Lj0g3v0022079.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 8910163 8916990 -
1 domain prediction
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Lj0g3v0022659.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 9136319 9142243 +
1 domain prediction
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Lj0g3v0032339.1
n.a. Helicase-like protein, partial [Medicago truncatula] gi|358345447|ref|XP_003636789.1| chr0 10218934 10219344 +
1 domain prediction
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Lj0g3v0033459.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 10564930 10565805 +
1 domain prediction
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Lj0g3v0033679.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357490905|ref|XP_003615740.1| chr0 10644357 10644695 -
1 domain prediction
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Lj0g3v0061109.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 20422837 20424294 +
1 domain prediction
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Lj0g3v0061119.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 20425862 20427427 +
1 domain prediction
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Lj0g3v0062089.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357521729|ref|XP_003631153.1| chr0 20843632 20844270 +
1 domain prediction
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Lj0g3v0064349.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357467591|ref|XP_003604080.1| chr0 22175187 22175507 -
1 domain prediction
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Lj0g3v0075759.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357491999|ref|XP_003616288.1| chr0 28829288 28830155 -
1 domain prediction
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Lj0g3v0075769.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 28830292 28832749 -
1 domain prediction
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Lj0g3v0080609.1
n.a. Helicase-like protein [Medicago truncatula] gi|357485655|ref|XP_003613115.1| chr0 31260126 31260664 -
1 domain prediction
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Lj0g3v0080849.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 31404321 31406128 -
1 domain prediction
 –
Lj0g3v0088449.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357491999|ref|XP_003616288.1| chr0 36134096 36136359 +
1 domain prediction
 –
Lj0g3v0121839.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 54397865 54401816 +
1 domain prediction
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Lj0g3v0131969.1
n.a. Helicase [Medicago truncatula] gi|357482535|ref|XP_003611554.1| chr0 60171983 60172379 -
1 domain prediction
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Lj0g3v0133739.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 61243388 61244110 +
1 domain prediction
 –
Lj0g3v0133749.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357450461|ref|XP_003595507.1| chr0 61244946 61245911 +
1 domain prediction
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Lj0g3v0161509.1
n.a. helicase-like protein [Oryza sativa Japonica Group] gi|38424032|dbj|BAD01692.1| chr0 75982911 75986899 +
1 domain prediction
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Lj0g3v0176549.1
n.a. Helicase-like protein [Medicago truncatula] gi|357507621|ref|XP_003624099.1| chr0 85297093 85297711 +
1 domain prediction
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Lj0g3v0207989.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357450461|ref|XP_003595507.1| chr0 104100132 104100841 -
1 domain prediction
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Lj0g3v0209849.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357491999|ref|XP_003616288.1| chr0 105372795 105373302 -
1 domain prediction
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Lj0g3v0219099.1
n.a. DNA repair and recombination protein PIF1 [Medicago truncatula] gi|357506355|ref|XP_003623466.1| chr0 111852377 111852656 +
1 domain prediction
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Lj0g3v0241029.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357477677|ref|XP_003609124.1| chr0 125093684 125098543 +
1 domain prediction
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Lj0g3v0241029.2
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357477677|ref|XP_003609124.1| chr0 125093684 125098543 +
1 domain prediction
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Lj0g3v0258909.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357450461|ref|XP_003595507.1| chr0 134428438 134429313 -
1 domain prediction
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Lj0g3v0274589.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 142385553 142386095 -
1 domain prediction
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Lj0g3v0280379.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 145409866 145414461 -
1 domain prediction
 –
Lj0g3v0281089.1
n.a. DNA repair and recombination protein PIF1 [Medicago truncatula] gi|357506355|ref|XP_003623466.1| chr0 145730805 145731920 -
1 domain prediction
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Lj0g3v0283869.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr0 147209316 147210128 +
1 domain prediction
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Lj0g3v0284349.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357470783|ref|XP_003605676.1| chr0 147534387 147536814 +
1 domain prediction
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Lj0g3v0310629.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|358343496|ref|XP_003635837.1| chr0 162282766 162283660 -
1 domain prediction
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Lj0g3v0319589.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 166838401 166840971 -
1 domain prediction
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Lj0g3v0323999.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 169282114 169288038 -
1 domain prediction
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Lj0g3v0339209.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 177676515 177677624 -
1 domain prediction
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Lj0g3v0363889.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357505011|ref|XP_003622794.1| chr0 191996353 191997663 +
1 domain prediction
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Lj1g3v1147270.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459287|ref|XP_003599924.1| chr1 14136892 14137417 +
1 domain prediction
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Lj1g3v1380990.1
n.a. DNA repair and recombination protein PIF1 [Medicago truncatula] gi|357506355|ref|XP_003623466.1| chr1 16736242 16737141 -
1 domain prediction
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Lj1g3v1527460.1
n.a. Helicase-like protein [Medicago truncatula] gi|357507621|ref|XP_003624099.1| chr1 18332813 18333151 +
1 domain prediction
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Lj1g3v1527620.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr1 18411703 18412578 -
1 domain prediction
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Lj1g3v1558960.1
n.a. Helicase-like protein [Medicago truncatula] gi|357467083|ref|XP_003603826.1| chr1 18717869 18718630 +
1 domain prediction
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Lj1g3v1558970.1
n.a. Helicase-like protein [Medicago truncatula] gi|357507621|ref|XP_003624099.1| chr1 18718720 18720077 +
1 domain prediction
 –
Lj1g3v1798570.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459409|ref|XP_003599985.1| chr1 21645190 21646305 +
1 domain prediction
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Lj1g3v1798790.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357459983|ref|XP_003600273.1| chr1 21763852 21764331 -
1 domain prediction
 –
Lj1g3v2979270.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr1 33899006 33900671 -
1 domain prediction
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Lj1g3v2979290.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr1 33904252 33904994 -
1 domain prediction
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Lj1g3v3312130.1
n.a. Helicase-like protein [Medicago truncatula] gi|357507621|ref|XP_003624099.1| chr1 37001941 37002279 +
1 domain prediction
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Lj1g3v3328610.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr1 37228815 37229969 +
1 domain prediction
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Lj1g3v3330280.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr1 38010124 38011731 -
1 domain prediction
 –