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Lj1g3v3330280.1

Overview

Field Value
Gene ID Lj1g3v3330280
Transcript ID Lj1g3v3330280.1
Lotus japonicus genome version MG20 v3.0
Description ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10492
1 446 446 7.40E-252 –
SUPERFAMILY
SSF52540
4 214 211 2.55E-22
IPR027417
Pfam
PF05970
23 388 366 2.30E-139
IPR010285
Gene3D
G3DSA:3.40.50.300
26 153 128 9.20E-05
IPR027417
CDD
cd00009
27 160 134 4.80E-05 –
SUPERFAMILY
SSF52540
162 231 70 4.51E-42
IPR027417
Gene3D
G3DSA:3.40.50.300
163 230 68 5.40E-26
IPR027417
Gene3D
G3DSA:3.40.50.300
271 314 44 5.40E-26
IPR027417
SUPERFAMILY
SSF52540
287 319 33 4.51E-42
IPR027417
SUPERFAMILY
SSF52540
353 504 152 4.51E-42
IPR027417
Gene3D
G3DSA:3.40.50.300
423 476 54 5.40E-26
IPR027417
Pfam
PF02689
428 481 54 6.40E-05
IPR003840

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000723
Biological process Telomere maintenance Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences.
Subterm of
GO:0003678
Molecular function DNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3330280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3330280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.