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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR12277
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.479s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063309.2
n.a. Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gi|508713596|gb|EOY05493.1| chr0 21450336 21453380 -
1 domain prediction
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Lj0g3v0251049.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao] gi|508781805|gb|EOY29061.1| chr0 130169739 130173745 -
1 domain prediction
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Lj0g3v0251049.2
n.a. Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao] gi|508781805|gb|EOY29061.1| chr0 130169739 130175514 -
1 domain prediction
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Lj0g3v0328109.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356570165|ref|XP_003553261.1| chr0 171504974 171511408 -
1 domain prediction
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Lj0g3v0335789.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356570165|ref|XP_003553261.1| chr0 175949955 175951680 -
1 domain prediction
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Lj0g3v0345669.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356548445|ref|XP_003542612.1| chr0 181318547 181321844 -
1 domain prediction
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Lj1g3v3702640.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356508754|ref|XP_003523119.1| chr1 42624161 42627520 +
1 domain prediction
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Lj1g3v3702640.2
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356513658|ref|XP_003525528.1| chr1 42626243 42627520 +
1 domain prediction
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Lj2g3v1106430.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356573747|ref|XP_003555018.1| chr2 17908103 17909014 -
1 domain prediction
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Lj2g3v1129580.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356573747|ref|XP_003555018.1| chr2 18000956 18005874 -
1 domain prediction
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Lj2g3v1129580.2
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356573747|ref|XP_003555018.1| chr2 18002496 18005874 -
1 domain prediction
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Lj2g3v1510570.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Vitis vinifera] gi|225427098|ref|XP_002276078.1| chr2 23879611 23884882 +
1 domain prediction
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Lj4g3v0084890.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 3, partial [Theobroma cacao] gi|508781807|gb|EOY29063.1| chr4 680729 683569 +
1 domain prediction
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Lj4g3v1400000.1
n.a. PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max] gi|356513658|ref|XP_003525528.1| chr4 22071852 22075660 -
1 domain prediction
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Lj4g3v2179240.1
n.a. PREDICTED: protein bem46-like isoform X3 [Cicer arietinum] gi|502150487|ref|XP_004507977.1| chr4 30129291 30133997 -
1 domain prediction
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Lj4g3v2179240.2
n.a. PREDICTED: protein bem46-like isoform X2 [Cicer arietinum] gi|502150485|ref|XP_004507976.1| chr4 30129291 30134500 -
1 domain prediction
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Lj5g3v2300370.1
n.a. Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gi|508785209|gb|EOY32465.1| chr5 34022266 34025704 +
1 domain prediction
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Lj6g3v1694960.1
n.a. Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao] gi|508781805|gb|EOY29061.1| chr6 19162694 19170832 +
1 domain prediction
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Lj6g3v1887780.1
n.a. PREDICTED: HBS1-like protein-like [Cicer arietinum] gi|502078960|ref|XP_004486108.1| chr6 20961195 20966654 -
1 domain prediction
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Lj6g3v1887780.2
n.a. PREDICTED: HBS1-like protein-like [Cicer arietinum] gi|502078960|ref|XP_004486108.1| chr6 20961195 20968017 -
1 domain prediction
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LotjaGi1g1v0230300.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT4G24760.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q5ZJ01|AB17B_CHICK Protein ABHD17B; TrEMBL-Plants: tr|A0A0B2P9D7|A0A0B2P9D7_GLYSO Abhydrolase domain-containing protein FAM108C1-like protein; Found in the gene: LotjaGi1g1v0230300 LjG1.1_chr1 53941539 53945452 +
1 domain prediction
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LotjaGi1g1v0615400.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G14390.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q6DCC5|AB17B_XENLA Protein ABHD17B; TrEMBL-Plants: tr|I1MLR6|I1MLR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0615400 LjG1.1_chr1 116192386 116201613 +
1 domain prediction
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LotjaGi1g1v0615400.2
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G14390.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q6DCC5|AB17B_XENLA Protein ABHD17B; TrEMBL-Plants: tr|D7SPY9|D7SPY9_VITVI Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0615400 LjG1.1_chr1 116192717 116199657 +
1 domain prediction
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LotjaGi2g1v0075200.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G38220.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q5ZJX1|AB17C_CHICK Protein ABHD17C; TrEMBL-Plants: tr|I1N6U0|I1N6U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0075200 LjG1.1_chr2 19650637 19665705 -
1 domain prediction
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LotjaGi2g1v0075200.2
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G38220.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|I1N6U0|I1N6U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0075200 LjG1.1_chr2 19651605 19665329 -
1 domain prediction
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LotjaGi2g1v0075200.3
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G38220.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q5ZJX1|AB17C_CHICK Protein ABHD17C; TrEMBL-Plants: tr|I1N6U0|I1N6U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0075200 LjG1.1_chr2 19651633 19665329 -
1 domain prediction
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LotjaGi2g1v0271200.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT3G30380.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q6DCC5|AB17B_XENLA Protein ABHD17B; TrEMBL-Plants: tr|A0A151RXR0|A0A151RXR0_CAJCA Abhydrolase domain-containing protein FAM108C1 family; Found in the gene: LotjaGi2g1v0271200 LjG1.1_chr2 74210714 74215035 +
1 domain prediction
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LotjaGi2g1v0271200.2
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT3G30380.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|A0A151RXR0|A0A151RXR0_CAJCA Abhydrolase domain-containing protein FAM108C1 family; Found in the gene: LotjaGi2g1v0271200 LjG1.1_chr2 74210804 74214345 +
1 domain prediction
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LotjaGi2g1v0337100.1
n.a. alpha/beta-Hydrolases superfamily protein; TAIR: AT1G32190.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|A0A0L9URM7|A0A0L9URM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0337100 LjG1.1_chr2 81413881 81420055 +
1 domain prediction
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LotjaGi4g1v0226300.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT4G24760.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|V7AXF0|V7AXF0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0226300 LjG1.1_chr4 53560187 53564110 -
1 domain prediction
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LotjaGi4g1v0284900.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT4G31020.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|I1LZL9|I1LZL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0284900 LjG1.1_chr4 65714960 65719847 +
1 domain prediction
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LotjaGi4g1v0327600.1
n.a. alpha/beta-Hydrolases superfamily protein; TAIR: AT5G20520.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P54069|BEM46_SCHPO Protein bem46; TrEMBL-Plants: tr|I3SUD2|I3SUD2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327600 LjG1.1_chr4 70568969 70574534 +
1 domain prediction
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LotjaGi4g1v0327600.2
n.a. alpha/beta-Hydrolases superfamily protein; TAIR: AT5G20520.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P54069|BEM46_SCHPO Protein bem46; TrEMBL-Plants: tr|I3SUD2|I3SUD2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327600 LjG1.1_chr4 70569490 70573277 +
1 domain prediction
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LotjaGi4g1v0327600.3
n.a. alpha/beta-Hydrolases superfamily protein; TAIR: AT5G20520.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P54069|BEM46_SCHPO Protein bem46; TrEMBL-Plants: tr|I3SUD2|I3SUD2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327600 LjG1.1_chr4 70569490 70573338 +
1 domain prediction
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LotjaGi5g1v0363900.1
n.a. Alpha/beta-Hydrolases superfamily protein; TAIR: AT5G19630.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q99390|YPT2_ECOLX Uncharacterized 31.7 kDa protein in traX-finO intergenic region; TrEMBL-Plants: tr|A0A151U888|A0A151U888_CAJCA Uncharacterized protein RP471 family; Found in the gene: LotjaGi5g1v0363900 LjG1.1_chr5 67876721 67883072 -
1 domain prediction
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