Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR24096
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 72 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.028s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0002899.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523002|ref|XP_003530131.1| chr0 1047803 1064160 -
1 domain prediction
 –
Lj0g3v0002899.2
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523415|ref|XP_003530335.1| chr0 1047803 1065285 -
1 domain prediction
 –
Lj0g3v0046889.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357481423|ref|XP_003610997.1| chr0 15647749 15655874 -
1 domain prediction
 –
Lj0g3v0078629.1
n.a. PREDICTED: 4-coumarate--CoA ligase 1-like isoform 2 [Glycine max] gi|356556256|ref|XP_003546442.1| chr0 30287599 30288017 -
1 domain prediction
 –
Lj0g3v0162639.1
n.a. PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cicer arietinum] gi|502135825|ref|XP_004502465.1| chr0 76780411 76781860 +
1 domain prediction
 –
Lj0g3v0165009.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cicer arietinum] gi|502082107|ref|XP_004487067.1| chr0 78255801 78257385 -
1 domain prediction
 –
Lj0g3v0169949.1
n.a. PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like isoform X3 [Cicer arietinum] gi|502123992|ref|XP_004498339.1| chr0 81325812 81332856 +
1 domain prediction
 –
Lj0g3v0173579.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356575070|ref|XP_003555665.1| chr0 83549281 83557312 -
1 domain prediction
 –
Lj0g3v0251229.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356523415|ref|XP_003530335.1| chr0 130310851 130318869 -
1 domain prediction
 –
Lj0g3v0262659.1
n.a. PREDICTED: acyl-CoA synthetase family member 4-like [Glycine max] gi|356506337|ref|XP_003521941.1| chr0 136189865 136191356 -
1 domain prediction
 –
Lj0g3v0262659.2
n.a. Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| chr0 136189865 136191356 -
1 domain prediction
 –
Lj0g3v0306889.1
n.a. 4-coumarate:CoA ligase [Amorpha fruticosa] gi|17063848|gb|AAL35216.1| chr0 160217849 160222114 +
1 domain prediction
 –
Lj0g3v0344549.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] gi|356508790|ref|XP_003523137.1| chr0 180790754 180794370 +
1 domain prediction
 –
Lj0g3v0344559.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 9-like [Glycine max] gi|356508790|ref|XP_003523137.1| chr0 180790754 180794370 +
1 domain prediction
 –
Lj1g3v0129860.1
n.a. 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] gi|351723189|ref|NP_001237270.1| chr1 1633708 1637930 -
1 domain prediction
 –
Lj1g3v0814960.1
n.a. PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cicer arietinum] gi|502135825|ref|XP_004502465.1| chr1 10697557 10709681 +
1 domain prediction
 –
Lj1g3v3779380.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357440909|ref|XP_003590732.1| chr1 43347458 43351751 +
1 domain prediction
 –
Lj1g3v3833570.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357440909|ref|XP_003590732.1| chr1 43403563 43407555 +
1 domain prediction
 –
Lj1g3v4833890.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] gi|356505647|ref|XP_003521601.1| chr1 58577235 58589016 +
1 domain prediction
 –
Lj1g3v4833900.1
n.a. n.a. chr1 58577235 58588863 +
1 domain prediction
 –
Lj1g3v4833910.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Cicer arietinum] gi|502112779|ref|XP_004494441.1| chr1 58580245 58589921 +
1 domain prediction
 –
Lj1g3v4833920.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] gi|356505647|ref|XP_003521601.1| chr1 58580245 58581431 +
1 domain prediction
 –
Lj1g3v4836240.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] gi|356505647|ref|XP_003521601.1| chr1 58642871 58644943 +
1 domain prediction
 –
Lj1g3v4836280.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid-CoA ligase [Medicago truncatula] gi|357511417|ref|XP_003625997.1| chr1 58649696 58652288 +
1 domain prediction
 –
Lj2g3v1536270.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 6-like [Glycine max] gi|356497603|ref|XP_003517649.1| chr2 24160356 24164266 +
1 domain prediction
 –
Lj2g3v2088200.1
n.a. PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max] gi|356497309|ref|XP_003517503.1| chr2 31511774 31519468 -
1 domain prediction
 –
Lj3g3v1113010.1
n.a. 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|373432591|ref|NP_001243292.1| chr3 14858279 14868294 -
1 domain prediction
 –
Lj3g3v2040010.1
n.a. 4-coumarate:CoA ligase [Amorpha fruticosa] gi|17063848|gb|AAL35216.1| chr3 26203808 26208381 +
1 domain prediction
 –
Lj3g3v2484140.1
n.a. 4-coumarate-coa ligase [Medicago truncatula] gi|357463591|ref|XP_003602077.1| chr3 30671348 30673623 +
1 domain prediction
 –
Lj3g3v2721410.2
n.a. Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| chr3 33398382 33405433 -
1 domain prediction
 –
Lj3g3v3054590.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|356539342|ref|XP_003538157.1| chr3 38145538 38146875 +
1 domain prediction
 –
Lj3g3v3055600.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|356539342|ref|XP_003538157.1| chr3 38147275 38153766 +
1 domain prediction
 –
Lj3g3v3055600.2
n.a. PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|356539342|ref|XP_003538157.1| chr3 38147275 38149209 +
1 domain prediction
 –
Lj3g3v3056700.1
n.a. 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|373432591|ref|NP_001243292.1| chr3 38204973 38214988 +
1 domain prediction
 –
Lj3g3v3337810.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356544492|ref|XP_003540684.1| chr3 40784789 40791135 -
1 domain prediction
 –
Lj3g3v3639630.1
n.a. PREDICTED: 4-coumarate--CoA ligase 2-like [Glycine max] gi|356540914|ref|XP_003538929.1| chr3 44189368 44189754 +
1 domain prediction
 –
Lj3g3v3639640.1
n.a. PREDICTED: 4-coumarate--CoA ligase 2-like [Glycine max] gi|356540914|ref|XP_003538929.1| chr3 44189832 44191067 +
1 domain prediction
 –
Lj3g3v3639650.1
n.a. PREDICTED: 4-coumarate--CoA ligase 2-like [Glycine max] gi|356540914|ref|XP_003538929.1| chr3 44191219 44191879 +
1 domain prediction
 –
Lj4g3v0878920.1
n.a. PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max] gi|356544492|ref|XP_003540684.1| chr4 13343319 13349665 +
1 domain prediction
 –
Lj4g3v2093610.2
n.a. PREDICTED: 4-coumarate--CoA ligase-like isoform X1 [Cicer arietinum] gi|502150208|ref|XP_004507841.1| chr4 28718519 28726257 -
1 domain prediction
 –
Lj4g3v2093620.1
n.a. n.a. chr4 28723418 28724437 +
1 domain prediction
 –
Lj4g3v2580340.1
n.a. Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid CoA ligase [Medicago truncatula] gi|357518659|ref|XP_003629618.1| chr4 34665477 34673954 +
1 domain prediction
 –
Lj4g3v3003900.1
n.a. PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max] gi|356511451|ref|XP_003524440.1| chr4 39824615 39837335 -
1 domain prediction
 –
Lj5g3v0277980.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max] gi|356553319|ref|XP_003545004.1| chr5 2252639 2256296 +
1 domain prediction
 –
Lj5g3v0279060.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max] gi|356553319|ref|XP_003545004.1| chr5 2276413 2279242 -
1 domain prediction
 –
Lj5g3v0279070.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum] gi|502126486|ref|XP_004499325.1| chr5 2279291 2279821 -
1 domain prediction
 –
Lj5g3v1575190.1
n.a. PREDICTED: long chain acyl-CoA synthetase 1-like [Glycine max] gi|356534712|ref|XP_003535896.1| chr5 22866578 22873693 +
1 domain prediction
 –
Lj5g3v1699020.1
n.a. PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cicer arietinum] gi|502118174|ref|XP_004496136.1| chr5 24547801 24550226 +
1 domain prediction
 –
Lj5g3v2057370.1
n.a. PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max] gi|356574400|ref|XP_003555336.1| chr5 29621554 29632700 -
1 domain prediction
 –
Lj5g3v2057370.2
n.a. PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like isoform X1 [Cicer arietinum] gi|502119827|ref|XP_004496750.1| chr5 29621554 29631415 -
1 domain prediction
 –