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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31636
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 169 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.061s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0785930.1
LjNsp2 transcription initiator for nodulation [Lotus japonicus] gi|84570611|dbj|BAE72690.1| chr1 10351835 10353855 +
1 domain prediction
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Lj3g3v2579340.1
LjNsp1 nodulation signaling pathway 1 protein [Lotus japonicus] gi|117518689|gb|ABK35066.1| chr3 32102896 32104999 +
1 domain prediction
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Lj0g3v0096959.1
n.a. PREDICTED: scarecrow-like protein 1-like isoform 1 [Glycine max] gi|356515965|ref|XP_003526667.1| chr0 40917521 40921371 +
1 domain prediction
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Lj0g3v0096969.1
n.a. PREDICTED: scarecrow-like protein 1-like isoform 1 [Glycine max] gi|356515965|ref|XP_003526667.1| chr0 40917521 40920299 +
1 domain prediction
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Lj0g3v0130909.1
n.a. PREDICTED: scarecrow-like protein 14-like [Cicer arietinum] gi|502145044|ref|XP_004505853.1| chr0 59461397 59464205 +
1 domain prediction
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Lj0g3v0135229.1
n.a. truncated nodulation signaling pathway 2 protein [Lotus japonicus] gi|117518704|gb|ABK35068.1| chr0 62096172 62096745 +
1 domain prediction
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Lj0g3v0135239.1
n.a. transcription initiator for nodulation [Lotus japonicus] gi|84570611|dbj|BAE72690.1| chr0 62098329 62098861 +
1 domain prediction
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Lj0g3v0167869.1
n.a. n.a. chr0 79913066 79916883 +
1 domain prediction
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Lj0g3v0182089.1
n.a. PREDICTED: nodulation-signaling pathway 2 protein-like [Glycine max] gi|356523346|ref|XP_003530301.1| chr0 88935959 88938107 +
1 domain prediction
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Lj0g3v0198459.1
n.a. GRAS family transcription factor [Medicago truncatula] gi|357519857|ref|XP_003630217.1| chr0 96786090 96787842 +
1 domain prediction
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Lj0g3v0206489.1
n.a. PREDICTED: protein SHORT-ROOT-like [Glycine max] gi|356511967|ref|XP_003524693.1| chr0 102906501 102908203 -
1 domain prediction
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Lj0g3v0220789.1
n.a. PREDICTED: scarecrow-like protein 14-like [Cicer arietinum] gi|502145044|ref|XP_004505853.1| chr0 113160966 113161702 -
1 domain prediction
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Lj0g3v0258999.1
n.a. PREDICTED: scarecrow-like protein 9-like [Glycine max] gi|356506678|ref|XP_003522103.1| chr0 134535554 134537406 +
1 domain prediction
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Lj0g3v0265999.1
n.a. PREDICTED: protein SHORT-ROOT-like [Glycine max] gi|356550396|ref|XP_003543573.1| chr0 137768280 137770371 +
1 domain prediction
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Lj0g3v0268999.1
n.a. PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Glycine max] gi|356514974|ref|XP_003526176.1| chr0 139370454 139374189 -
1 domain prediction
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Lj0g3v0277879.1
n.a. PREDICTED: scarecrow-like protein 1-like [Glycine max] gi|356552759|ref|XP_003544730.1| chr0 144286653 144288037 -
1 domain prediction
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Lj0g3v0277879.2
n.a. PREDICTED: scarecrow-like protein 1-like [Glycine max] gi|356546860|ref|XP_003541840.1| chr0 144286653 144290873 -
1 domain prediction
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Lj0g3v0280979.1
n.a. PREDICTED: scarecrow-like protein 27-like [Glycine max] gi|356539166|ref|XP_003538071.1| chr0 145669994 145671758 +
1 domain prediction
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Lj0g3v0280989.1
n.a. PREDICTED: scarecrow-like protein 6-like [Glycine max] gi|356498250|ref|XP_003517966.1| chr0 145671791 145673004 +
1 domain prediction
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Lj0g3v0283859.1
n.a. PREDICTED: scarecrow-like protein 32-like [Glycine max] gi|356542103|ref|XP_003539510.1| chr0 147198645 147200802 -
1 domain prediction
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Lj0g3v0300249.1
n.a. n.a. chr0 155998676 155999681 +
1 domain prediction
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Lj0g3v0300259.1
n.a. PREDICTED: scarecrow-like protein 14-like [Cicer arietinum] gi|502145044|ref|XP_004505853.1| chr0 155999906 156006103 +
1 domain prediction
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Lj0g3v0303729.1
n.a. n.a. chr0 158207994 158216714 +
1 domain prediction
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Lj0g3v0303739.1
n.a. PREDICTED: scarecrow-like protein 14-like [Cicer arietinum] gi|502145044|ref|XP_004505853.1| chr0 158207994 158216896 -
1 domain prediction
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Lj0g3v0303759.2
n.a. PREDICTED: scarecrow-like protein 14-like [Cicer arietinum] gi|502145044|ref|XP_004505853.1| chr0 158214045 158214687 -
1 domain prediction
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Lj0g3v0310339.1
n.a. PREDICTED: scarecrow-like protein 6-like [Glycine max] gi|356506481|ref|XP_003522010.1| chr0 162055468 162058722 +
1 domain prediction
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Lj0g3v0314829.1
n.a. PREDICTED: chitin-inducible gibberellin-responsive protein 1-like [Cicer arietinum] gi|502084134|ref|XP_004487630.1| chr0 164382261 164385851 -
1 domain prediction
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Lj0g3v0347519.1
n.a. PREDICTED: scarecrow-like protein 14-like [Glycine max] gi|356541231|ref|XP_003539083.1| chr0 182345964 182348154 +
1 domain prediction
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Lj0g3v0349319.1
n.a. PREDICTED: scarecrow-like protein 6-like [Glycine max] gi|356495143|ref|XP_003516440.1| chr0 183439179 183442309 -
1 domain prediction
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Lj0g3v0363479.1
n.a. PREDICTED: scarecrow-like protein 3-like [Glycine max] gi|356541514|ref|XP_003539220.1| chr0 191734518 191735783 +
1 domain prediction
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Lj1g3v1290460.1
n.a. GRAS family transcription factor [Medicago truncatula] gi|357519857|ref|XP_003630217.1| chr1 15435261 15437013 -
1 domain prediction
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Lj1g3v2580600.1
n.a. PREDICTED: protein SCARECROW-like [Glycine max] gi|356530141|ref|XP_003533642.1| chr1 29519662 29523444 -
1 domain prediction
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Lj1g3v2938410.1
n.a. PREDICTED: scarecrow-like protein 32-like [Glycine max] gi|356514330|ref|XP_003525859.1| chr1 33075210 33077243 -
1 domain prediction
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Lj1g3v4850500.1
n.a. PREDICTED: DELLA protein GAI1-like [Glycine max] gi|356503932|ref|XP_003520753.1| chr1 58730139 58733567 +
1 domain prediction
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Lj1g3v4851630.1
n.a. DELLA protein GAIP [Medicago truncatula] gi|357511373|ref|XP_003625975.1| chr1 58756774 58758554 +
1 domain prediction
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Lj2g3v0342790.1
n.a. PREDICTED: scarecrow-like protein 8-like [Cicer arietinum] gi|502163429|ref|XP_004512836.1| chr2 5440510 5443380 -
1 domain prediction
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Lj2g3v1195310.1
n.a. PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3-like, partial [Glycine max] gi|356541516|ref|XP_003539221.1| chr2 18937184 18939396 -
1 domain prediction
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Lj2g3v1779790.1
n.a. GRAS family transcription factor [Medicago truncatula] gi|357518381|ref|XP_003629479.1| chr2 27172069 27174261 +
1 domain prediction
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Lj2g3v1968410.1
n.a. PREDICTED: protein SHORT-ROOT-like [Glycine max] gi|356496989|ref|XP_003517347.1| chr2 28684270 28686685 +
1 domain prediction
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Lj2g3v2089740.1
n.a. PREDICTED: scarecrow-like protein 3-like [Cicer arietinum] gi|502184152|ref|XP_004517294.1| chr2 31655178 31657572 +
1 domain prediction
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Lj2g3v3245790.1
n.a. PREDICTED: scarecrow-like protein 33-like [Cicer arietinum] gi|502148476|ref|XP_004507177.1| chr2 41523680 41524248 -
1 domain prediction
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Lj2g3v3245800.1
n.a. PREDICTED: scarecrow-like protein 33-like [Cicer arietinum] gi|502148476|ref|XP_004507177.1| chr2 41524243 41525059 -
1 domain prediction
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Lj2g3v3245810.1
n.a. PREDICTED: scarecrow-like protein 9-like [Glycine max] gi|356544570|ref|XP_003540722.1| chr2 41525052 41525939 -
1 domain prediction
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Lj2g3v3246890.1
n.a. PREDICTED: scarecrow-like protein 5-like [Glycine max] gi|356553526|ref|XP_003545106.1| chr2 41562677 41565065 -
1 domain prediction
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Lj2g3v3338900.1
n.a. PREDICTED: scarecrow-like transcription factor PAT1-like [Glycine max] gi|356551832|ref|XP_003544277.1| chr2 42492544 42496425 +
1 domain prediction
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Lj3g3v0821290.1
n.a. PREDICTED: scarecrow-like protein 3-like [Glycine max] gi|356508428|ref|XP_003522959.1| chr3 10020165 10021676 +
1 domain prediction
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Lj3g3v0821300.1
n.a. PREDICTED: scarecrow-like protein 3-like [Glycine max] gi|356508428|ref|XP_003522959.1| chr3 10024201 10025505 +
1 domain prediction
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Lj3g3v0821310.1
n.a. n.a. chr3 10027777 10030299 -
1 domain prediction
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Lj3g3v0821320.1
n.a. PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3-like, partial [Glycine max] gi|356541516|ref|XP_003539221.1| chr3 10027777 10030299 +
1 domain prediction
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Lj3g3v1486970.1
n.a. PREDICTED: DELLA protein RGL1-like [Glycine max] gi|356554755|ref|XP_003545708.1| chr3 18898746 18900595 +
1 domain prediction
 –