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Lj2g3v1968410.1

Overview

Field Value
Gene ID Lj2g3v1968410
Transcript ID Lj2g3v1968410.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: protein SHORT-ROOT-like [Glycine max] gi|356496989|ref|XP_003517347.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 – –
PANTHER
PTHR31636
11 480 470 0 –
PANTHER
PTHR31636:SF9
11 480 470 0
IPR030019
MobiDBLite
mobidb-lite
61 94 34 – –
ProSiteProfiles
PS50985
80 459 380 51.721
IPR005202
Pfam
PF03514
108 479 372 1.40E-109
IPR005202

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0008356
Biological process Asymmetric cell division The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity.
Subterm of
GO:0009956
Biological process Radial pattern formation The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0048366
Biological process Leaf development The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj2g3v1968410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1968410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.