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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR33144
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We have found 84 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.021s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072439.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 26875914 26877079 +
1 domain prediction
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Lj0g3v0077579.1
n.a. Os05g0202500 [Oryza sativa Japonica Group] gi|115462569|ref|NP_001054884.1| chr0 29768866 29773094 +
1 domain prediction
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Lj0g3v0181809.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 88754659 88755926 -
1 domain prediction
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Lj0g3v0194359.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 94833502 94837361 +
1 domain prediction
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Lj0g3v0261539.1
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 135525486 135527475 -
1 domain prediction
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Lj0g3v0261539.2
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 135526329 135527472 -
1 domain prediction
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Lj0g3v0289679.1
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150424826 -
1 domain prediction
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Lj0g3v0289679.2
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150428449 -
1 domain prediction
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Lj0g3v0303389.1
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 157898155 157904168 +
1 domain prediction
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Lj0g3v0303389.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 157898155 157903752 +
1 domain prediction
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Lj0g3v0352829.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 185592775 185595812 +
1 domain prediction
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Lj0g3v0353969.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 186392941 186400631 -
1 domain prediction
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Lj0g3v0353969.2
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 186392941 186395567 -
1 domain prediction
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Lj2g3v1203370.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr2 19318829 19322026 -
1 domain prediction
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Lj2g3v1734700.1
n.a. TNP1 [Medicago truncatula] gi|357489269|ref|XP_003614922.1| chr2 26787768 26796773 +
1 domain prediction
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Lj4g3v3017370.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr4 40492204 40496229 +
1 domain prediction
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Lj6g3v0635190.3
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr6 6214273 6215750 -
1 domain prediction
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LotjaGi1g1v0085000.1
n.a. ATP synthase epsilon chain, chloroplastic; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q06SF3|ATPE_STIHE ATP synthase epsilon chain, chloroplastic; TrEMBL-Plants: tr|I3SJY9|I3SJY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0085000 LjG1.1_chr1 12260043 12263965 +
1 domain prediction
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LotjaGi1g1v0286600_LC.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7Z202|CUPC_DICDI Calcium up-regulated protein C; TrEMBL-Plants: tr|I3SL59|I3SL59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0286600_LC LjG1.1_chr1 69525748 69528042 -
1 domain prediction
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LotjaGi1g1v0450800_LC.1
n.a. E3 ubiquitin-protein ligase CHIP; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9Z1B3|PLCB1_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1; TrEMBL-Plants: tr|A0A151UGB0|A0A151UGB0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0450800_LC LjG1.1_chr1 94993727 95012242 -
1 domain prediction
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LotjaGi1g1v0450800_LC.2
n.a. E3 ubiquitin-protein ligase CHIP; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9Z1B3|PLCB1_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1; TrEMBL-Plants: tr|A0A151UGB0|A0A151UGB0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0450800_LC LjG1.1_chr1 94994023 95012032 -
1 domain prediction
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LotjaGi1g1v0450800_LC.3
n.a. E3 ubiquitin-protein ligase CHIP; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9Z1B3|PLCB1_MOUSE 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1; TrEMBL-Plants: tr|A0A151UGB0|A0A151UGB0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0450800_LC LjG1.1_chr1 94994051 95000086 -
1 domain prediction
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LotjaGi1g1v0540400_LC.1
n.a. NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; TAIR: AT3G17720.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|A3PLM1|KDUI_RHOS1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi1g1v0540400_LC LjG1.1_chr1 106892621 106893733 -
1 domain prediction
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LotjaGi1g1v0577600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71; TrEMBL-Plants: tr|V7C1B5|V7C1B5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0577600_LC LjG1.1_chr1 111702873 111715419 +
1 domain prediction
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LotjaGi2g1v0054600_LC.1
n.a. Transmembrane-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0054600_LC LjG1.1_chr2 10829886 10834591 -
1 domain prediction
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LotjaGi2g1v0108300.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi2g1v0108300 LjG1.1_chr2 37258722 37262590 -
1 domain prediction
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LotjaGi2g1v0142100_LC.1
n.a. Guanine nucleotide-binding protein subunit beta-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0142100_LC LjG1.1_chr2 51743413 51748552 -
1 domain prediction
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LotjaGi2g1v0154100_LC.1
n.a. 3-dehydroquinate synthase; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|Q96Y96|AROB_SULTO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
1 domain prediction
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LotjaGi2g1v0154100_LC.2
n.a. tRNA modification GTPase MnmE; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|P0A4Z5|AROB_MYCBO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
1 domain prediction
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LotjaGi2g1v0207700_LC.1
n.a. En/Spm-like transposon protein, putative; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P46620|NU5C_MAIZE NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic; TrEMBL-Plants: tr|V7C5U2|V7C5U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0207700_LC LjG1.1_chr2 65284633 65285173 -
1 domain prediction
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LotjaGi2g1v0289300.1
n.a. ATP-dependent helicase/deoxyribonuclease subunit B; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8SQY7|STT4_ENCCU Probable phosphatidylinositol 4-kinase STT4 homolog; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0289300 LjG1.1_chr2 76250899 76259178 -
1 domain prediction
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LotjaGi2g1v0388300_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
1 domain prediction
 –
LotjaGi2g1v0388300_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
1 domain prediction
 –
LotjaGi2g1v0388300_LC.3
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
1 domain prediction
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LotjaGi2g1v0388300_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
1 domain prediction
 –
LotjaGi2g1v0388300_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
1 domain prediction
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LotjaGi2g1v0388300_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
1 domain prediction
 –
LotjaGi2g1v0388300_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88453057 88460224 +
1 domain prediction
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LotjaGi3g1v0092100.1
n.a. ATP-dependent helicase/deoxyribonuclease subunit B; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi3g1v0092100 LjG1.1_chr3 10916480 10921011 -
1 domain prediction
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LotjaGi3g1v0187800_LC.2
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q5JE27|GGR_THEKO Digeranylgeranylglycerophospholipid reductase; TrEMBL-Plants: tr|I3SL59|I3SL59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0187800_LC LjG1.1_chr3 26449533 26453860 +
1 domain prediction
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LotjaGi3g1v0187800_LC.3
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|Q5JE27|GGR_THEKO Digeranylgeranylglycerophospholipid reductase; TrEMBL-Plants: tr|I3SL59|I3SL59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0187800_LC LjG1.1_chr3 26449533 26453860 +
1 domain prediction
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LotjaGi3g1v0196300_LC.1
n.a. En/Spm transposon protein-like; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|Q0VZ68|TAM_CHOCO Tyrosine 2,3-aminomutase; TrEMBL-Plants: tr|K7KKD1|K7KKD1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0196300_LC LjG1.1_chr3 28581700 28582778 -
1 domain prediction
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LotjaGi3g1v0203200_LC.1
n.a. Transmembrane-like protein; TAIR: AT3G29170.1 transmembrane protein (DUF872); Swiss-Prot: sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230; TrEMBL-Plants: tr|V7CJ15|V7CJ15_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0203200_LC LjG1.1_chr3 29653282 29657311 -
1 domain prediction
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LotjaGi3g1v0215800_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|O13828|DCP2_SCHPO mRNA decapping complex subunit 2; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215800_LC LjG1.1_chr3 32399983 32401484 -
1 domain prediction
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LotjaGi3g1v0251500.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi3g1v0251500 LjG1.1_chr3 42105265 42109968 +
1 domain prediction
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LotjaGi3g1v0251500.2
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi3g1v0251500 LjG1.1_chr3 42105310 42109673 +
1 domain prediction
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LotjaGi3g1v0251500.3
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi3g1v0251500 LjG1.1_chr3 42105339 42109731 +
1 domain prediction
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LotjaGi3g1v0291900_LC.1
n.a. En/Spm-like transposon protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q59X11|ATG2_CANAL Autophagy-related protein 2; TrEMBL-Plants: tr|I3SVN6|I3SVN6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0291900_LC LjG1.1_chr3 59453015 59462362 +
1 domain prediction
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LotjaGi3g1v0291900_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q15149|PLEC_HUMAN Plectin; TrEMBL-Plants: tr|I3SVN6|I3SVN6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0291900_LC LjG1.1_chr3 59453015 59462362 +
1 domain prediction
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LotjaGi3g1v0291900_LC.3
n.a. En/Spm-like transposon protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q59X11|ATG2_CANAL Autophagy-related protein 2; TrEMBL-Plants: tr|I3SVN6|I3SVN6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0291900_LC LjG1.1_chr3 59453021 59462520 +
1 domain prediction
 –