Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR001119 is a S-layer homology domain.
<p>S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [[cite:PUB00043754], [cite:PUB00043755]]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [[cite:PUB00043756], [cite:PUB00043757]]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [[cite:PUB00043758]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | AT5G23890 [Arabidopsis thaliana] gi|222424656|dbj|BAH20282.1| | 6 | ||
| – | Oxidoreductase/transition metal ion-binding protein, putative; TAIR: AT5G23890.1 GPI-anchored adhesin-like protein; Swiss-Prot: sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a; TrEMBL-Plants: tr|K7MI46|K7MI46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141000 | 10 | ||
| – | Oxidoreductase/transition metal ion-binding protein, putative; TAIR: AT5G23890.2 GPI-anchored adhesin-like protein; Swiss-Prot: sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a; TrEMBL-Plants: tr|K7LDR6|K7LDR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0141000 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| PTHR33740:SF3 | PANTHER | 1 | 33.33 |