Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR003425

Source: InterPro

Description

IPR003425 is a CCB3/YggT.

<p>This family includes YlmG from bacteria, CCB3 and YlmG homologue proteins (YLMG1-1, YLMG1-2, YLMG2) from Arabidopsis [[cite:PUB00075315]]. This family also includes uncharacterised protein YggT, associated with bacteria outside of the cyanobacteria. YlmG might be involved in chloroplast and cyanobacterial division processes [[cite:PUB00097642]].</p> <p>Cofactor maturation pathways such as the CCB system (system IV) for cytochrome c-heme attachment are conserved in all organisms performing oxygenic photosynthesis [[cite:PUB00075312]]. The CCB system consists of four proteins: CCB1-4. CCB2 and CCB4 are paralogues derived from a unique cyanobacterial ancestor [[cite:PUB00075312]]. Orthologues are conserved in higher plants [[cite:PUB00075315]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj1g3v1788210.1
– YGGT family protein [Citrus unshiu] gi|343887332|dbj|BAK61878.1|
Domains
4
Lj3g3v2039930.1
– YGGT family protein [Arabidopsis thaliana] gi|15234345|ref|NP_194528.1|
Domains
10
Lj5g3v1888370.1
– Cofactor assembly [Theobroma cacao] gi|508774161|gb|EOY21417.1|
Domains
8
LotjaGi1g1v0371300.1
– YGGT family protein; TAIR: AT5G21920.1 YGGT family protein; Swiss-Prot: sp|Q9C595|YLMG2_ARATH YlmG homolog protein 2, chloroplastic; TrEMBL-Plants: tr|V7AXC1|V7AXC1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0371300
Domains
4
LotjaGi3g1v0342400.1
– YGGT family protein; TAIR: AT4G27990.1 YGGT family protein; Swiss-Prot: sp|Q9SUE0|YMG12_ARATH YlmG homolog protein 1-2, chloroplastic; TrEMBL-Plants: tr|I3ST74|I3ST74_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0342400
Domains
10
LotjaGi5g1v0284200.1
– Protein cofactor assembly of complex c subunit b ccb3, chloroplastic; TAIR: AT5G36120.1 cofactor assembly, complex C (B6F); Swiss-Prot: sp|Q8RWM7|CCB3_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic; TrEMBL-Plants: tr|A0A0B2Q709|A0A0B2Q709_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0284200
Domains
9
LotjaGi5g1v0284200.2
– Cofactor assembly; TAIR: AT5G36120.1 cofactor assembly, complex C (B6F); Swiss-Prot: sp|Q8RWM7|CCB3_ARATH Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic; TrEMBL-Plants: tr|K7LKS8|K7LKS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0284200
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TRANSMEMBRANE Phobius 1 14.29