Domain Predictions — View

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IPR009424

Source: InterPro

Description

IPR009424 is a Arabinogalactan protein 16/20/22/41.

<p>This entry represents a group of arabinogalactan proteins (AGPs) from plants, and includes AGP16, AGP20, AGP22 and AGP41 [[cite:PUB00053881]]. These proteoglycans have been implicated in various processes associated with plant growth and development, including embryogenesis and cell proliferation</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 6

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0049099.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arabinogalactan peptide 22-like [Cicer arietinum] gi\|502138468\|ref\|XP_004503418.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE	14
Lj0g3v0247339.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arabinogalactan peptide 20-like [Glycine max] gi\|356520850\|ref\|XP_003529073.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF3 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE	14
Lj1g3v0948480.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arabinogalactan peptide [Medicago truncatula] gi\|357463821\|ref\|XP_003602192.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK SignalP-TM_GRAM_POSITIVE TMhelix TRANSMEMBRANE	14
Lj1g3v5032350.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arabinogalactan peptide 20-like [Glycine max] gi\|356506044\|ref\|XP_003521798.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK TMhelix TRANSMEMBRANE	13
Lj2g3v0777200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Arabinogalactan peptide [Medicago truncatula] gi\|357500477\|ref\|XP_003620527.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK TMhelix TRANSMEMBRANE	13
Lj2g3v0777220.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: arabinogalactan peptide 22-like [Glycine max] gi\|356520575\|ref\|XP_003528937.1\|	Domains CYTOPLASMIC_DOMAIN IPR009424 NON_CYTOPLASMIC_DOMAIN PF06376 PTHR33374 PTHR33374:SF6 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_EUK TMhelix TRANSMEMBRANE	13

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
TRANSMEMBRANE	Phobius	1	16.67