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IPR040418 is a Protein crowded nuclei.
<p>CROWDED NUCLEI (CRWN) proteins, also known as LITTLE NUCLEI, are important architectural components of plant nuclei and are thought to play diverse roles in heterochromatin organization and the control of nuclear morphology [[cite:PUB00090929], [cite:PUB00090930]]. CRWN proteins regulate ABA-controlled seed germination by modulating the degradation of protein ABI5. CRWN3 has been shown to colocalize with ABI5 in nuclear bodies, where it might participate in its degradation [[cite:PUB00090928]].</p> <p>Proteins in this entry also includes NMCP1A/B from rice. NMCP1B, also known as OsNMCP1, regulates drought resistance and root growth through chromatin accessibility [[cite:PUB00097188]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Nucleus organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Nuclear matrix constituent-like protein 1; TAIR: AT1G67230.1 little nuclei1; Swiss-Prot: sp|F4HRT5|CRWN1_ARATH Protein CROWDED NUCLEI 1; TrEMBL-Plants: tr|K7MV72|K7MV72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0525200 | 5 | ||
| – | Nuclear matrix constituent-like protein 1; TAIR: AT1G13220.3 nuclear matrix constituent protein-like protein; Swiss-Prot: sp|Q9SAF6|CRWN2_ARATH Protein CROWDED NUCLEI 2; TrEMBL-Plants: tr|K7K7H5|K7K7H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0282800 | 5 | ||
| – | Nuclear matrix constituent-like protein 1; TAIR: AT5G65770.1 little nuclei4; Swiss-Prot: sp|Q9FLH0|CRWN4_ARATH Protein CROWDED NUCLEI 4; TrEMBL-Plants: tr|A0A072UNX6|A0A072UNX6_MEDTR Nuclear matrix constituent-like protein, putative; Found in the gene: LotjaGi4g1v0091500 | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 33.33 |