Domain Predictions — View

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cd02123

Source: CDD

Description

PA_C_RZF_like

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj5g3v1869790.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max] gi\|356576139\|ref\|XP_003556191.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.50.30.30 IPR001841 IPR003137 IPR013083 NON_CYTOPLASMIC_DOMAIN PF02225 PF13639 PS50089 PTHR22765 PTHR22765:SF46 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF52025 SSF57850 SignalP-TM_GRAM_NEGATIVE SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK TMhelix TRANSMEMBRANE cd00162 cd02123	26
Lj5g3v1869790.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max] gi\|356576139\|ref\|XP_003556191.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.50.30.30 IPR001841 IPR003137 IPR013083 NON_CYTOPLASMIC_DOMAIN PF02225 PF13639 PS50089 PTHR22765 PTHR22765:SF46 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF52025 SSF57850 SignalP-TM_GRAM_NEGATIVE SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK TMhelix TRANSMEMBRANE cd00162 cd02123 mobidb-lite	27
LotjaGi5g1v0280800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT1G71980.1 Protease-associated (PA) RING/U-box zinc finger family protein; Swiss-Prot: sp\|Q8VZ14\|RMR2_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 2; TrEMBL-Plants: tr\|A0A0R4J678\|A0A0R4J678_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0280800	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.50.30.30 IPR001841 IPR003137 IPR013083 NON_CYTOPLASMIC_DOMAIN PF02225 PF13639 PS50089 PTHR22765 PTHR22765:SF247 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF52025 SSF57850 SignalP-TM TMhelix TRANSMEMBRANE cd02123 cd16486	24
LotjaGi5g1v0280800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Ring finger protein; TAIR: AT1G71980.1 Protease-associated (PA) RING/U-box zinc finger family protein; Swiss-Prot: sp\|Q10R93\|RMR1_ORYSJ Receptor homology region, transmembrane domain- and RING domain-containing protein 1; TrEMBL-Plants: tr\|A0A0R4J678\|A0A0R4J678_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0280800	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.50.30.30 IPR003137 IPR013083 NON_CYTOPLASMIC_DOMAIN PF02225 PTHR22765 PTHR22765:SF247 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF52025 SSF57850 SignalP-TM TMhelix TRANSMEMBRANE cd02123	19
LotjaGi5g1v0280800.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	E3 ubiquitin-protein ligase; TAIR: AT1G71980.1 Protease-associated (PA) RING/U-box zinc finger family protein; Swiss-Prot: sp\|Q8VZ14\|RMR2_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 2; TrEMBL-Plants: tr\|A0A0R4J678\|A0A0R4J678_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0280800	Domains CYTOPLASMIC_DOMAIN G3DSA:3.30.40.10 G3DSA:3.50.30.30 IPR001841 IPR003137 IPR013083 NON_CYTOPLASMIC_DOMAIN PF02225 PF13639 PS50089 PTHR22765 PTHR22765:SF247 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00184 SSF52025 SSF57850 SignalP-TM TMhelix TRANSMEMBRANE cd02123 cd16486	24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd16486	CDD	1	20.00