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GO:0005849

Overview

Field Value
Namespace Cellular component
Short description MRNA cleavage factor complex
Full defintion Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
Subterm of

Relationships

The relationship of GO:0005849 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
PMID
Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.
Microbiol Mol Biol Rev. ; 63 (2): 405–45.PMID: 10357856

Formation of mRNA 3' ends in eukaryotes requires the interaction of transacting factors with cis-acting signal elements on the RNA precursor by two distinct mechanisms, one for the cleavage of most replication-dependent histone transcripts and the other for cleavage and polyadenylation of the majority of eukaryotic mRNAs. Most of the basic factors have now been identified, as well as some of the key protein-protein and RNA-protein interactions. This processing can be regulated by changing the levels or activity of basic factors or by using activators and repressors, many of which are components of the splicing machinery. These regulatory mechanisms act during differentiation, progression through the cell cycle, or viral infections. Recent findings suggest that the association of cleavage/polyadenylation factors with the transcriptional complex via the carboxyl-terminal domain of the RNA polymerase II (Pol II) large subunit is the means by which the cell restricts polyadenylation to Pol II transcripts. The processing of 3' ends is also important for transcription termination downstream of cleavage sites and for assembly of an export-competent mRNA. The progress of the last few years points to a remarkable coordination and cooperativity in the steps leading to the appearance of translatable mRNA in the cytoplasm.

Associated Lotus transcripts 4

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 5-like [Glycine max] gi|356535879|ref|XP_003536470.1| 3
PREDICTED: protein CLP1 homolog [Glycine max] gi|356536520|ref|XP_003536785.1| 2
Cleavage and polyadenylation specificity factor subunit 5; TAIR: AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit; Swiss-Prot: sp|Q8GXS3|CFIS2_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 2; TrEMBL-Plants: tr|A0A0L9VEN5|A0A0L9VEN5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0301800 3
Cleavage and polyadenylation specificity factor subunit 5; TAIR: AT4G29820.1 homolog of CFIM-25; Swiss-Prot: sp|Q94AF0|CFIS1_ARATH Pre-mRNA cleavage factor Im 25 kDa subunit 1; TrEMBL-Plants: tr|I1L1L9|I1L1L9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0228200_LC 3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process MRNA polyadenylation 1 25.00