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GO:0019774

Overview

Field Value
Namespace Cellular component
Short description Proteasome core complex, beta-subunit complex
Full defintion The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus.
Subterm of

Relationships

The relationship of GO:0019774 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCrb
PMID
Primary structural features of the 20S proteasome subunits of rice (Oryza sativa).
Gene. ; 250 (1-2): 61–6.PMID: 10854779

The 20S proteasome is the proteolytic complex that is involved in removing abnormal proteins, and it also has other diverse biological functions. Its structure comprises 28 subunits arranged in four rings of seven subunits, and exists as a hollow cylinder. The two outer rings and two inner rings form an alpha7beta7beta7alpha7 structure, and each subunit, alpha and beta, exists as seven different types, thus giving 14 kinds of subunits. In this study, we report the primary structures of the 14 proteasomal subunit subfamilies in rice (Oryza sativa), representing the first set for all of the subunits from monocots. Amino acid sequence homology within the rice family (alpha-type: 28.9-42.1%; beta-type: 17.2-31. 9%) were lower than those between rice subunits and corresponding orthologs from Arabidopsis and yeast (alpha-type: 49.2-94.5%; beta-type: 34.8-87.7%). Structural features observed in eukaryotic proteasome subunits, i.e., alpha- or beta-type signature at the N-termini, Thr active sites in beta1, beta2 and beta5 subunits, and nuclear localization signal-like sequences in some alpha-type subunits, were shown to be conserved in rice.

Associated Lotus transcripts 6

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3S150|I3S150_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0157600 2
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3; TrEMBL-Plants: tr|I3S150|I3S150_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0157600 2
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3S150|I3S150_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0157600 2
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3T8P9|I3T8P9_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0656000 2
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3T8P9|I3T8P9_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0656000 2
Proteasome subunit beta type; TAIR: AT1G21720.1 proteasome beta subunit C1; Swiss-Prot: sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A; TrEMBL-Plants: tr|I3T8P9|I3T8P9_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi1g1v0656000 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process 1 16.67