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Lj0g3v0020069.1

Overview

Field	Value
Gene ID	Lj0g3v0020069
Transcript ID	Lj0g3v0020069.1
Lotus japonicus genome version	MG20 v3.0
Description	Arginine/serine-rich splicing factor [Medicago truncatula] gi\|357462657\|ref\|XP_003601610.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	46	46	–	–
PANTHER	PTHR23147:SF11 View details on PTHR23147:SF11 Search for proteins/transripts with this domain View external data on PTHR23147:SF11	12	240	229	1.30E-89	–
PANTHER	PTHR23147 View details on PTHR23147 Search for proteins/transripts with this domain View external data on PTHR23147	12	240	229	1.30E-89	–
Gene3D	G3DSA:3.30.70.330 View details on G3DSA:3.30.70.330 Search for proteins/transripts with this domain View external data on G3DSA:3.30.70.330	30	131	102	1.30E-26	IPR012677 Show description in modal box View details on IPR012677 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50102 View details on PS50102 Search for proteins/transripts with this domain View external data on PS50102	47	125	79	17.387	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54928 View details on SSF54928 Search for proteins/transripts with this domain View external data on SSF54928	47	152	106	5.37E-29	IPR012677 Show description in modal box View details on IPR012677 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00360 View details on SM00360 Search for proteins/transripts with this domain View external data on SM00360	48	121	74	1.70E-21	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00076 View details on PF00076 Search for proteins/transripts with this domain View external data on PF00076	49	118	70	5.00E-20	IPR000504 Show description in modal box View details on IPR000504 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	127	256	130	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0020069.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0020069.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.