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Lj0g3v0064089.1

Overview

Field	Value
Gene ID	Lj0g3v0064089
Transcript ID	Lj0g3v0064089.1
Lotus japonicus genome version	MG20 v3.0
Description	Plant-specific domain TIGR01568 family protein [Medicago truncatula] gi\|357491461\|ref\|XP_003616018.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33057 View details on PTHR33057 Search for proteins/transripts with this domain View external data on PTHR33057	3	186	184	9.50E-54	–
PANTHER	PTHR33057:SF11 View details on PTHR33057:SF11 Search for proteins/transripts with this domain View external data on PTHR33057:SF11	3	186	184	9.50E-54	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	57	77	21	–	–
TIGRFAM	TIGR01568 View details on TIGR01568 Search for proteins/transripts with this domain View external data on TIGR01568	122	184	63	6.80E-24	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51754 View details on PS51754 Search for proteins/transripts with this domain View external data on PS51754	124	183	60	18.899	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04844 View details on PF04844 Search for proteins/transripts with this domain View external data on PF04844	128	184	57	3.70E-24	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0064089.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0064089.1, powered by CORGI.

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